View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1368_high_54 (Length: 258)
Name: NF1368_high_54
Description: NF1368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1368_high_54 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 29 - 258
Target Start/End: Original strand, 1095723 - 1095952
Alignment:
| Q |
29 |
agtttctagttatcttagatttcgagtgatgtcttatattcctaggacgaatttagaagattgtattttgtctgtatagtttaggacttaatctcacctt |
128 |
Q |
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| T |
1095723 |
agtttctagttatcttagatttcgagtgatgtcttatattcctaggacgaatttagaagattgtattttgtctgtatagtttaggacttaatctcacctt |
1095822 |
T |
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| Q |
129 |
gcacaaaacatattgtgcttgtataaaaactttgctaagtatcatttctcaaagcttgttttggtgaaaatcatttttggtttacttttgggttttatgt |
228 |
Q |
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| T |
1095823 |
gcacaaaacatattgtgcttgcataaaaactttgctaagtatcatttttcaaagcttgttttcgtgaaaatcatttttggtttacttttgggttttatgt |
1095922 |
T |
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| Q |
229 |
gcattttcaattctttaaaaacaaatttct |
258 |
Q |
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| T |
1095923 |
gcattttcaattctttaaaaacaaatttct |
1095952 |
T |
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Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 41 - 168
Target Start/End: Original strand, 21715196 - 21715323
Alignment:
| Q |
41 |
tcttagatttcgagtgatgtcttatattcctaggacgaatttagaagattgtattttgtctgtatagtttaggacttaatctcaccttgcacaaaacata |
140 |
Q |
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|||||| ||| |||||||||||||||||||| ||| |||||||||||||||||||| | | || | ||||||| | ||||||||||| |||||||| |
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| T |
21715196 |
tcttaggttttgagtgatgtcttatattcctcggatagttttagaagattgtattttgtttctctattgtaggactaattctcaccttgcttaaaacata |
21715295 |
T |
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| Q |
141 |
ttgtgcttgtataaaaactttgctaagt |
168 |
Q |
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| T |
21715296 |
ttttgcttgcataaaatctttgctaagt |
21715323 |
T |
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