View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1368_high_62 (Length: 223)

Name: NF1368_high_62
Description: NF1368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1368_high_62
NF1368_high_62
[»] chr6 (9 HSPs)
chr6 (47-191)||(4611293-4611438)
chr6 (1-51)||(4611223-4611273)
chr6 (78-155)||(31265835-31265913)
chr6 (51-155)||(14312621-14312723)
chr6 (78-149)||(14306220-14306292)
chr6 (49-156)||(4238451-4238554)
chr6 (48-155)||(7301055-7301158)
chr6 (86-155)||(3604573-3604643)
chr6 (79-155)||(15081480-15081557)
[»] scaffold0006 (1 HSPs)
scaffold0006 (78-155)||(229879-229956)
[»] chr7 (23 HSPs)
chr7 (78-155)||(27234559-27234636)
chr7 (89-178)||(11616629-11616723)
chr7 (78-155)||(37490591-37490669)
chr7 (78-153)||(33584619-33584695)
chr7 (48-155)||(30463045-30463150)
chr7 (78-155)||(47454060-47454138)
chr7 (53-155)||(5724681-5724780)
chr7 (48-148)||(31581423-31581521)
chr7 (78-155)||(2846649-2846727)
chr7 (86-155)||(5083445-5083515)
chr7 (78-150)||(38181852-38181925)
chr7 (99-155)||(44604451-44604508)
chr7 (99-155)||(45890831-45890888)
chr7 (78-155)||(7425850-7425929)
chr7 (48-148)||(23703945-23704043)
chr7 (89-132)||(29434577-29434620)
chr7 (94-152)||(32776055-32776114)
chr7 (89-155)||(36117729-36117796)
chr7 (78-155)||(2842025-2842103)
chr7 (78-155)||(29257603-29257681)
chr7 (79-155)||(8150016-8150092)
chr7 (78-155)||(49100476-49100553)
chr7 (93-144)||(29645218-29645270)
[»] chr8 (29 HSPs)
chr8 (78-178)||(5392105-5392211)
chr8 (52-155)||(2349383-2349485)
chr8 (78-153)||(45425541-45425617)
chr8 (78-155)||(44790395-44790473)
chr8 (79-181)||(4480412-4480519)
chr8 (89-155)||(5962446-5962513)
chr8 (78-155)||(9014759-9014837)
chr8 (78-155)||(29730869-29730947)
chr8 (89-155)||(12653754-12653821)
chr8 (78-156)||(31132786-31132865)
chr8 (48-155)||(22324928-22325033)
chr8 (94-155)||(39171615-39171677)
chr8 (89-155)||(38252410-38252478)
chr8 (89-151)||(21587344-21587403)
chr8 (101-155)||(28802846-28802901)
chr8 (51-155)||(32967250-32967352)
chr8 (90-155)||(139090-139156)
chr8 (78-155)||(7258340-7258418)
chr8 (94-155)||(32241397-32241459)
chr8 (78-155)||(33190882-33190960)
chr8 (49-155)||(37219734-37219841)
chr8 (78-155)||(42412356-42412434)
chr8 (51-155)||(45197643-45197744)
chr8 (52-150)||(34133160-34133256)
chr8 (91-155)||(138674-138737)
chr8 (94-126)||(8618200-8618232)
chr8 (78-176)||(27973633-27973737)
chr8 (78-176)||(28030902-28031006)
chr8 (94-149)||(31410587-31410643)
[»] chr4 (31 HSPs)
chr4 (78-151)||(4360385-4360459)
chr4 (78-155)||(18849732-18849810)
chr4 (89-151)||(283454-283517)
chr4 (51-155)||(38160125-38160227)
chr4 (78-155)||(8295085-8295163)
chr4 (77-155)||(42185769-42185848)
chr4 (78-155)||(28974362-28974440)
chr4 (78-132)||(41436537-41436591)
chr4 (4-50)||(49448763-49448809)
chr4 (78-155)||(49448897-49448975)
chr4 (78-155)||(49812285-49812363)
chr4 (78-155)||(54729457-54729535)
chr4 (78-155)||(4727577-4727654)
chr4 (102-181)||(17237123-17237208)
chr4 (78-155)||(22872359-22872439)
chr4 (49-155)||(41203767-41203871)
chr4 (99-155)||(49306664-49306721)
chr4 (89-151)||(39976371-39976430)
chr4 (77-155)||(4357622-4357701)
chr4 (77-132)||(33047547-33047602)
chr4 (89-155)||(35909546-35909613)
chr4 (93-155)||(38977063-38977126)
chr4 (78-155)||(26185238-26185316)
chr4 (94-155)||(30568735-30568797)
chr4 (78-155)||(39979836-39979914)
chr4 (78-155)||(41710117-41710195)
chr4 (89-126)||(3686078-3686115)
chr4 (74-131)||(28279889-28279946)
chr4 (99-155)||(42024174-42024231)
chr4 (89-125)||(27977214-27977250)
chr4 (78-176)||(52676978-52677082)
[»] chr2 (27 HSPs)
chr2 (78-155)||(28572264-28572341)
chr2 (51-155)||(23684991-23685093)
chr2 (52-155)||(30757541-30757642)
chr2 (51-155)||(28301466-28301568)
chr2 (78-155)||(2882041-2882119)
chr2 (48-155)||(24775781-24775886)
chr2 (78-181)||(43950390-43950499)
chr2 (89-155)||(15859318-15859385)
chr2 (89-155)||(36155580-36155647)
chr2 (101-155)||(40965093-40965148)
chr2 (78-155)||(565145-565223)
chr2 (78-155)||(2756730-2756808)
chr2 (78-155)||(3100456-3100534)
chr2 (78-132)||(18181210-18181264)
chr2 (89-150)||(28108353-28108415)
chr2 (94-190)||(28527036-28527138)
chr2 (52-155)||(28925821-28925922)
chr2 (48-155)||(43077699-43077804)
chr2 (78-155)||(7649949-7650026)
chr2 (99-155)||(33755334-33755391)
chr2 (78-155)||(13375161-13375240)
chr2 (51-155)||(37247857-37247959)
chr2 (94-155)||(5211931-5211993)
chr2 (74-155)||(36103274-36103356)
chr2 (101-155)||(41436158-41436212)
chr2 (78-155)||(44534456-44534534)
chr2 (51-153)||(435053-435153)
[»] chr1 (33 HSPs)
chr1 (51-148)||(17342860-17342955)
chr1 (51-155)||(32587797-32587899)
chr1 (52-155)||(50267412-50267513)
chr1 (78-155)||(52830388-52830466)
chr1 (48-154)||(26756005-26756109)
chr1 (48-155)||(28277009-28277117)
chr1 (89-155)||(32348285-32348352)
chr1 (78-156)||(51749156-51749235)
chr1 (78-155)||(3555529-3555607)
chr1 (78-155)||(42926190-42926268)
chr1 (74-155)||(21304781-21304862)
chr1 (94-181)||(49945004-49945097)
chr1 (4-51)||(13500862-13500909)
chr1 (55-155)||(19532893-19532991)
chr1 (78-195)||(27391403-27391526)
chr1 (78-155)||(17724688-17724766)
chr1 (78-155)||(28839395-28839473)
chr1 (52-155)||(36467169-36467270)
chr1 (94-155)||(52432384-52432446)
chr1 (94-155)||(2571435-2571495)
chr1 (98-155)||(43895923-43895980)
chr1 (102-155)||(10370158-10370213)
chr1 (78-176)||(34813973-34814077)
chr1 (89-132)||(8773309-8773352)
chr1 (78-155)||(45889221-45889300)
chr1 (77-190)||(46536395-46536514)
chr1 (78-155)||(5040549-5040627)
chr1 (78-155)||(5442396-5442474)
chr1 (78-132)||(34877088-34877142)
chr1 (99-155)||(8327794-8327851)
chr1 (74-131)||(40019059-40019116)
chr1 (79-155)||(40019816-40019893)
chr1 (78-176)||(3718798-3718901)
[»] chr5 (20 HSPs)
chr5 (77-155)||(11099451-11099530)
chr5 (78-155)||(3725242-3725320)
chr5 (52-155)||(7613740-7613841)
chr5 (89-155)||(39008199-39008266)
chr5 (89-181)||(15814709-15814807)
chr5 (52-155)||(25814397-25814498)
chr5 (78-155)||(33988256-33988334)
chr5 (53-155)||(6610871-6610971)
chr5 (77-172)||(35666940-35667039)
chr5 (78-132)||(8369694-8369748)
chr5 (78-155)||(8692792-8692870)
chr5 (78-155)||(35646063-35646141)
chr5 (94-155)||(41184732-41184794)
chr5 (78-155)||(42575612-42575690)
chr5 (51-155)||(20189924-20190027)
chr5 (78-156)||(32539718-32539797)
chr5 (94-155)||(16283561-16283623)
chr5 (78-155)||(36469068-36469146)
chr5 (78-181)||(858391-858500)
chr5 (103-181)||(42211410-42211494)
[»] chr3 (29 HSPs)
chr3 (89-155)||(9017868-9017935)
chr3 (51-155)||(53876409-53876511)
chr3 (78-155)||(39866526-39866604)
chr3 (78-155)||(43639489-43639567)
chr3 (78-155)||(54122197-54122275)
chr3 (77-155)||(5245467-5245546)
chr3 (89-181)||(2868641-2868739)
chr3 (78-155)||(11251100-11251178)
chr3 (78-155)||(21296476-21296554)
chr3 (102-155)||(26134676-26134730)
chr3 (78-155)||(33994713-33994791)
chr3 (48-132)||(48744288-48744369)
chr3 (89-184)||(10855061-10855162)
chr3 (78-181)||(17776936-17777045)
chr3 (78-181)||(19078237-19078346)
chr3 (89-155)||(32023073-32023141)
chr3 (53-155)||(32827277-32827377)
chr3 (52-132)||(41031605-41031685)
chr3 (96-155)||(39365010-39365071)
chr3 (51-125)||(54458313-54458384)
chr3 (89-151)||(36097632-36097695)
chr3 (94-155)||(8706218-8706280)
chr3 (94-155)||(9058105-9058167)
chr3 (94-155)||(54783035-54783097)
chr3 (94-155)||(55415412-55415474)
chr3 (99-155)||(1772079-1772136)
chr3 (78-196)||(14756041-14756165)
chr3 (92-155)||(49006267-49006331)
chr3 (106-153)||(54845491-54845539)
[»] scaffold0034 (1 HSPs)
scaffold0034 (89-155)||(98892-98959)
[»] scaffold0321 (1 HSPs)
scaffold0321 (78-151)||(9529-9603)


Alignment Details
Target: chr6 (Bit Score: 126; Significance: 4e-65; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 47 - 191
Target Start/End: Original strand, 4611293 - 4611438
Alignment:
Q  47 tttttcaattcaatatatttc-aatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaattttctctatccttcat 145  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  4611293 tttttcaattcaatttatttccaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaatcattttctctatccttcat 4611392  T
Q  146 ttatacatttaataaatgtgaaatgagcaaatgactaagtgaattt 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  4611393 ttatacatttaataaatgtgaaatgagcaaatgactaagtgaattt 4611438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 4611223 - 4611273
Alignment:
Q  1 tcattttgtaaaaaattattgttttaaaataacttatccatttcacttttt 51  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4611223 tcattttgtaaaaaattattgttttaaaataacttatccattttacttttt 4611273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 31265835 - 31265913
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttatacattt 155  Q
    ||||||| || |||| |||||||||||||||||||| |||||||||||| | |||||||| ||||||||||||||||||    
T  31265835 atttatgatagtggagaatgcaccaatacttaacaagagcacttaaaactatttttctctctccttcatttatacattt 31265913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 51 - 155
Target Start/End: Complemental strand, 14312723 - 14312621
Alignment:
Q  51 tcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttat 149  Q
    ||||||||||| |||||| ||||    ||||||| ||||||| |||||||||||||||||||||| ||||||||| || |||||| | ||||||||||||    
T  14312723 tcaattcaatacatttcactttac---atttatgataatggagaatgcaccaatacttaacaaaaacacttaaaaccatttttctatgtccttcatttat 14312627  T
Q  150 acattt 155  Q
     |||||    
T  14312626 gcattt 14312621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 149
Target Start/End: Complemental strand, 14306292 - 14306220
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttat 149  Q
    ||||||| ||||||| |||||||||||||||||||||| ||||||||| || |||||| | ||||||||||||    
T  14306292 atttatgataatggagaatgcaccaatacttaacaaaaacacttaaaaccatttttctatgtccttcatttat 14306220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 156
Target Start/End: Original strand, 4238451 - 4238554
Alignment:
Q  49 tttcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaattttctctatccttcattta 148  Q
    ||||||||||||| |||||| ||||    ||||||| || || | |||||||||||||||||||| |||||||||||| || || ||| || ||||||||    
T  4238451 tttcaattcaatagatttcactttac---atttatgatagtgaagaatgcaccaatacttaacaagagcacttaaaactatatt-tctctctttcattta 4238546  T
Q  149 tacattta 156  Q
    ||||||||    
T  4238547 tacattta 4238554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 155
Target Start/End: Complemental strand, 7301158 - 7301055
Alignment:
Q  48 ttttcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaattttctctatccttcattt 147  Q
    |||||||||||||||||| || ||||    ||||||| ||||||| ||||||| |||||||||||||  |||||||||| ||||| ||| || || ||||    
T  7301158 ttttcaattcaatatattccactttac---atttatgataatggagaatgcacaaatacttaacaaacacacttaaaactatttt-tctctcatttattt 7301063  T
Q  148 atacattt 155  Q
    ||||||||    
T  7301062 atacattt 7301055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 155
Target Start/End: Complemental strand, 3604643 - 3604573
Alignment:
Q  86 taatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    ||||||| |||||||||||||||||||| || |||||||| || |||||||| || || ||||||||||||    
T  3604643 taatggagaatgcaccaatacttaacaagagaacttaaaaccatttttctctctcttttatttatacattt 3604573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 155
Target Start/End: Original strand, 15081480 - 15081557
Alignment:
Q  79 tttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttatacattt 155  Q
    |||||| || |||| ||||||| ||||||||||||  ||||||||||| | ||||||||  |||||||||||||||||    
T  15081480 tttatgatagtggagaatgcacaaatacttaacaagtgcacttaaaactatttttctctcaccttcatttatacattt 15081557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 229879 - 229956
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaattttctctatccttcatttatacattt 155  Q
    ||||||| ||||||| |||||||||||||||||||| ||||||||||||| |||||| | ||||||||||||||||||    
T  229879 atttatgataatggagaatgcaccaatacttaacaagagcacttaaaacatttttctatctccttcatttatacattt 229956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 27234559 - 27234636
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaattttctctatccttcatttatacattt 155  Q
    ||||||| || |||| |||||| ||||||||||||||| |||||||||||||||||||| || |||||||||||||||    
T  27234559 atttatgatagtggagaatgcatcaatacttaacaaaaacacttaaaacaattttctctgtcattcatttatacattt 27234636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 89 - 178
Target Start/End: Original strand, 11616629 - 11616723
Alignment:
Q  89 tggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttataca----tttaataaatgtgaaatgagcaaatg 178  Q
    |||| |||||||||||||||||||| ||||||||||| || |||||||| |||||||||||||||    |||||||  |||||||||||||||||    
T  11616629 tggagaatgcaccaatacttaacaagagcacttaaaaccatttttctctctccttcatttatacatttttttaatatgtgtgaaatgagcaaatg 11616723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 37490669 - 37490591
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    ||||||| || |||| ||||||||||||||||| |||| ||||||||| || |||||||| ||||||||||||||||||    
T  37490669 atttatgatagtggagaatgcaccaatacttaaaaaaaacacttaaaatcatttttctctctccttcatttatacattt 37490591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 153
Target Start/End: Original strand, 33584619 - 33584695
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacat 153  Q
    ||||||| || |||| ||| |||||||||||||||| ||||||||||| || |||||||| ||||||||||||||||    
T  33584619 atttatgatactggagaatacaccaatacttaacaatagcacttaaaaccatttttctctctccttcatttatacat 33584695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 155
Target Start/End: Original strand, 30463045 - 30463150
Alignment:
Q  48 ttttcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatt 146  Q
    |||||||||||||||||| || ||||    ||||||| |  |||| ||||||||||||||||||||  ||||||||||| | |||||||| || ||||||    
T  30463045 ttttcaattcaatatattccattttac---atttatgattgtggagaatgcaccaatacttaacaagtgcacttaaaactatttttctctctcattcatt 30463141  T
Q  147 tatacattt 155  Q
    |||||||||    
T  30463142 tatacattt 30463150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 47454060 - 47454138
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt-ctctatccttcatttatacattt 155  Q
    ||||||| || |||| ||||||||||||||||||||  ||||||||||| ||||| |||| ||||||||||||| ||||    
T  47454060 atttatgatagtggagaatgcaccaatacttaacaagtgcacttaaaactattttactctctccttcatttatatattt 47454138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 155
Target Start/End: Complemental strand, 5724780 - 5724681
Alignment:
Q  53 aattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt-ctctatccttcatttatac 151  Q
    |||||||||||||||| ||||    ||||||| || |||| ||||||| ||||||||||||  ||||||||||| ||||| |||| ||||||||||||||    
T  5724780 aattcaatatatttcactttac---atttatgatagtggagaatgcactaatacttaacaag-gcacttaaaactatttttctctctccttcatttatac 5724685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 148
Target Start/End: Complemental strand, 31581521 - 31581423
Alignment:
Q  48 ttttcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatt 146  Q
    |||||||||||||||||| || ||||    ||||||| || |||| ||||||||||||||||||||| | ||||||||| | |||| ||| |||||||||    
T  31581521 ttttcaattcaatatattccattttac---atttatgatattggagaatgcaccaatacttaacaaatgtacttaaaactatttttatctctccttcatt 31581425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 2846727 - 2846649
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttatacattt 155  Q
    ||||||| || |||| |||  ||||||||||||||| |||||||||||| | |||||||| || |||||||||||||||    
T  2846727 atttatgatagtggagaatagaccaatacttaacaagagcacttaaaactatttttctctctcgttcatttatacattt 2846649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 155
Target Start/End: Complemental strand, 5083515 - 5083445
Alignment:
Q  86 taatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttatacattt 155  Q
    |||||||  ||||||||||||||||||| |||||||||||| | |||| ||| ||||| ||||||||||||    
T  5083515 taatggagtatgcaccaatacttaacaagagcacttaaaactatttttatctttcctttatttatacattt 5083445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 38181925 - 38181852
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttata 150  Q
    ||||||| || ||||||||||||||||||||| ||| | ||||||||| || |||||||| || ||||||||||    
T  38181925 atttatgatagtggaaaatgcaccaatacttaccaagaacacttaaaaccatttttctctctctttcatttata 38181852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 155
Target Start/End: Complemental strand, 44604508 - 44604451
Alignment:
Q  99 accaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    ||||||||||||||| | ||||||||| || |||||||| ||||||||||||||||||    
T  44604508 accaatacttaacaagaacacttaaaatcatttttctctctccttcatttatacattt 44604451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 155
Target Start/End: Complemental strand, 45890888 - 45890831
Alignment:
Q  99 accaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    |||||||||||||||||||| |||||| || |||||||| |||||| |||||||||||    
T  45890888 accaatacttaacaaaagcatttaaaaccatttttctctctccttcttttatacattt 45890831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 7425929 - 7425850
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatactt-aacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    ||||||| || |||| ||||||||||||||| ||||| | ||||||||| || |||||||| || |||||||||||||||    
T  7425929 atttatgatagtggagaatgcaccaatacttaaacaagaacacttaaaaccatttttctctctcattcatttatacattt 7425850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 148
Target Start/End: Original strand, 23703945 - 23704043
Alignment:
Q  48 ttttcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatt 146  Q
    |||||||||||||||||||||   | ||| ||||||| || |||| |||||| ||||| |||||||  || |||||||| | |||||||| |||||||||    
T  23703945 ttttcaattcaatatatttca---ttttacatttatgatagtggagaatgcagcaataattaacaagtgcgcttaaaactatttttctctctccttcatt 23704041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 132
Target Start/End: Complemental strand, 29434620 - 29434577
Alignment:
Q  89 tggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt 132  Q
    |||| ||| ||||||||||||||||||||||||||||| |||||    
T  29434620 tggagaatccaccaatacttaacaaaagcacttaaaactatttt 29434577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 152
Target Start/End: Original strand, 32776055 - 32776114
Alignment:
Q  94 aatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttataca 152  Q
    ||||||||||||||||||||| ||||| |||| || |||||||| ||||||| |||||||    
T  32776055 aatgcaccaatacttaacaaaggcactcaaaaccatttttctctctccttcacttataca 32776114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 155
Target Start/End: Original strand, 36117729 - 36117796
Alignment:
Q  89 tggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttatacattt 155  Q
    |||| ||||||| ||||||||||||  ||||||||||| | |||||||| ||||| ||||||||||||    
T  36117729 tggagaatgcacaaatacttaacaagtgcacttaaaactatttttctctttcctttatttatacattt 36117796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 2842103 - 2842025
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt-ctctatccttcatttatacattt 155  Q
    ||||||| || |||| |||||| |||||||| |||| | ||||||| || ||||| |||| ||||||||||||||||||    
T  2842103 atttatgatagtggagaatgcatcaatacttgacaataacacttaacaccatttttctctctccttcatttatacattt 2842025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 29257603 - 29257681
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    ||||||| || ||||||||  ||||||| ||||||| ||||||||||| || |||| ||| | ||||||||||||||||    
T  29257603 atttatgatagtggaaaatagaccaataattaacaagagcacttaaaaccatttttttctctgcttcatttatacattt 29257681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 155
Target Start/End: Original strand, 8150016 - 8150092
Alignment:
Q  79 tttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    |||||| ||||||||||||||| |||| || |||||| ||||||||| || |||||||| || |||| ||||||||||    
T  8150016 tttatgataatggaaaatgcacaaatatttgacaaaa-cacttaaaaccatttttctctctctttcacttatacattt 8150092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 49100553 - 49100476
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaattttctctatccttcatttatacattt 155  Q
    ||||||| || |||| |||  |||||||||||||||  |||||||||  | |||||||| || |||||||||||||||    
T  49100553 atttatgatagtggagaataaaccaatacttaacaagtgcacttaaactatttttctctgtctttcatttatacattt 49100476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 29645270 - 29645218
Alignment:
Q  93 aaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttca 144  Q
    ||||||||||||||||||||| | |||||||||  |||||||||| |||||||    
T  29645270 aaatgcaccaatacttaacaagaacacttaaaattaattttctctctccttca 29645218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 78 - 178
Target Start/End: Original strand, 5392105 - 5392211
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt-ctctatccttcatttatacattt-----aataaatgtgaaatga 171  Q
    ||||||| || |||| ||||||||||||||| ||||||||||||||||| ||||| |||| ||||||||||||||||||     ||||  ||||||||||    
T  5392105 atttatgatagtggagaatgcaccaatacttgacaaaagcacttaaaaccatttttctctctccttcatttatacatttgtcttaataggtgtgaaatga 5392204  T
Q  172 gcaaatg 178  Q
    |||||||    
T  5392205 gcaaatg 5392211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 52 - 155
Target Start/End: Original strand, 2349383 - 2349485
Alignment:
Q  52 caattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaa--ttttctctatccttcatttat 149  Q
    |||||||||||||| |||||||    ||||||| || |||| ||||||| ||||||||||||| ||||||||||| |  |||||||| ||||||||||||    
T  2349383 caattcaatatattccaatttac---atttatgatagtggagaatgcacaaatacttaacaaatgcacttaaaactattttttctctctccttcatttat 2349479  T
Q  150 acattt 155  Q
    ||||||    
T  2349480 acattt 2349485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 78 - 153
Target Start/End: Original strand, 45425541 - 45425617
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaattt-tctctatccttcatttatacat 153  Q
    ||||||| || ||||||||||| ||||||||||||| |||||||||||| |||| ||||| ||||||||||||||||    
T  45425541 atttatgatagtggaaaatgcatcaatacttaacaagagcacttaaaaccatttgtctctctccttcatttatacat 45425617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 44790473 - 44790395
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttatacattt 155  Q
    ||||||| || |||| ||||||||||||||||||||  ||||||||||| | |||||||| ||||||||||||||||||    
T  44790473 atttatgatagtggagaatgcaccaatacttaacaagtgcacttaaaactatttttctctctccttcatttatacattt 44790395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 79 - 181
Target Start/End: Complemental strand, 4480519 - 4480412
Alignment:
Q  79 tttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaattttctctatccttcatttatacat-----ttaataaatgtgaaatgagc 173  Q
    |||||| || |||| ||||||||||||| ||||||||| | |||||| | |||||||| || |||||||||||||     |||||| |||| ||||||||    
T  4480519 tttatgatactggagaatgcaccaatacataacaaaagtatttaaaatatttttctctctctttcatttatacatttttcttaatatatgttaaatgagc 4480420  T
Q  174 aaatgact 181  Q
    ||||||||    
T  4480419 aaatgact 4480412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 89 - 155
Target Start/End: Complemental strand, 5962513 - 5962446
Alignment:
Q  89 tggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttatacattt 155  Q
    |||| |||||||||||||||||||||||||||||||||   |||||| | ||||||||||||||||||    
T  5962513 tggagaatgcaccaatacttaacaaaagcacttaaaacgttttttctatctccttcatttatacattt 5962446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 9014759 - 9014837
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    ||||||| || |||| |||||| ||||||||||||||||||||||||| || |||||||| | ||||||||||| ||||    
T  9014759 atttatgatagtggagaatgcatcaatacttaacaaaagcacttaaaatcatttttctctcttcttcatttatatattt 9014837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 29730947 - 29730869
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    ||||||| || |||| |||||||||||||||||||| | ||||||||| || |||||||| ||||||||||||| ||||    
T  29730947 atttatgatagtggagaatgcaccaatacttaacaagaacacttaaaaccacttttctctctccttcatttatatattt 29730869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 155
Target Start/End: Original strand, 12653754 - 12653821
Alignment:
Q  89 tggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttatacattt 155  Q
    |||| |||||||||||| |||||||| ||||||||||| | |||||||| | ||||||||||||||||    
T  12653754 tggataatgcaccaatatttaacaaacgcacttaaaactatttttctctctacttcatttatacattt 12653821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 156
Target Start/End: Original strand, 31132786 - 31132865
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattta 156  Q
    ||||||| || |||| |||  ||||||||||||||| ||||||||||| || ||||||||||||||| | ||||||||||    
T  31132786 atttatgatactggagaatataccaatacttaacaagagcacttaaaatcatttttctctatccttcgtctatacattta 31132865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 155
Target Start/End: Complemental strand, 22325033 - 22324928
Alignment:
Q  48 ttttcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt-ctctatccttcatt 146  Q
    |||||||||||||||||| || ||||    ||||||| || |||||||||||| |||| |||||||   |||||||||  ||||| |||| |||||||||    
T  22325033 ttttcaattcaatatattccactttac---atttatgatagtggaaaatgcactaatatttaacaagtacacttaaaattatttttctctctccttcatt 22324937  T
Q  147 tatacattt 155  Q
    |||||||||    
T  22324936 tatacattt 22324928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 39171615 - 39171677
Alignment:
Q  94 aatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    |||||| |||||||||||||||| |||||||| || |||||||| ||||||||||||| ||||    
T  39171615 aatgcatcaatacttaacaaaagtacttaaaaccatttttctctctccttcatttatatattt 39171677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 155
Target Start/End: Complemental strand, 38252478 - 38252410
Alignment:
Q  89 tggaaaatgcaccaatacttaacaaaagcacttaaaacaa--ttttctctatccttcatttatacattt 155  Q
    |||| ||||||| ||||||||||||  ||||||||||| |  |||||||| ||||||||||||||||||    
T  38252478 tggagaatgcactaatacttaacaagtgcacttaaaactattttttctctctccttcatttatacattt 38252410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 151
Target Start/End: Original strand, 21587344 - 21587403
Alignment:
Q  89 tggaaaatgcaccaatacttaacaaaagcacttaaaacaattttctctatccttcatttatac 151  Q
    |||| |||||||||||||||||||| ||||||||||||    |||||| ||||||||||||||    
T  21587344 tggagaatgcaccaatacttaacaagagcacttaaaac---cttctctctccttcatttatac 21587403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 28802846 - 28802901
Alignment:
Q  101 caatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    ||||||||||||| ||||||||||| || |||||||| || |||||||||||||||    
T  28802846 caatacttaacaagagcacttaaaaccatttttctctctctttcatttatacattt 28802901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 155
Target Start/End: Complemental strand, 32967352 - 32967250
Alignment:
Q  51 tcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttat 149  Q
    ||||||||||||||| || ||||    ||||||| || |||| |||| |||||||||||| ||  ||||||||||| | |||||||| | ||||||||||    
T  32967352 tcaattcaatatattccactttaa---atttatgatagtggagaatggaccaatacttaagaagtgcacttaaaactatttttctctcttcttcatttat 32967256  T
Q  150 acattt 155  Q
    ||||||    
T  32967255 acattt 32967250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 155
Target Start/End: Original strand, 139090 - 139156
Alignment:
Q  90 ggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    |||||||||||||||||||||||| || | |||||| || |||| ||| || |||||||||||||||    
T  139090 ggaaaatgcaccaatacttaacaagagaatttaaaatcatttttatctctcattcatttatacattt 139156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 7258418 - 7258340
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    ||||||| |||||  |||||||||||||||| |||| ||| ||||||| || |||||||| ||||||||| ||| ||||    
T  7258418 atttatgataatgataaatgcaccaatacttgacaagagcgcttaaaaccatttttctctttccttcattaatatattt 7258340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 155
Target Start/End: Complemental strand, 32241459 - 32241397
Alignment:
Q  94 aatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    |||||| ||||||||||||| | ||||||||| || |||| ||| ||||||||||||||||||    
T  32241459 aatgcatcaatacttaacaagaacacttaaaatcatttttatctctccttcatttatacattt 32241397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 33190960 - 33190882
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    ||||||| || |||| ||||||  |||||||||||| | ||||||||| || |||||||| | ||||||||||||||||    
T  33190960 atttatgatagtggagaatgcattaatacttaacaagaacacttaaaatcatttttctctcttcttcatttatacattt 33190882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 155
Target Start/End: Complemental strand, 37219841 - 37219734
Alignment:
Q  49 tttcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagca---cttaaaacaat-tttctctatccttca 144  Q
    |||||||| ||||||||||| |||||   ||||||| ||| ||| |||||||| ||||||||||| | ||   |||||||  || ||||||| |||||||    
T  37219841 tttcaatttaatatatttcactttat---atttatgataagggagaatgcacccatacttaacaacaacaacacttaaaatcatatttctctctccttca 37219745  T
Q  145 tttatacattt 155  Q
    |||||||||||    
T  37219744 tttatacattt 37219734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 42412434 - 42412356
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttatacattt 155  Q
    ||||||| ||||||| ||||||||||||  | |||| |||||||||||| | |||||||| || |||| ||||||||||    
T  42412434 atttatgataatggagaatgcaccaatatatgacaagagcacttaaaactatttttctctctcattcacttatacattt 42412356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 155
Target Start/End: Original strand, 45197643 - 45197744
Alignment:
Q  51 tcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaattttctctatccttcatttata 150  Q
    |||||||||||||||||| ||||    |||||||  | || | |||||| ||||||||||||||| |||||||||  ||||| ||| || ||||||||||    
T  45197643 tcaattcaatatatttcattttac---atttatgacagtgaagaatgcatcaatacttaacaaaaacacttaaaatcattttttctctcattcatttata 45197739  T
Q  151 cattt 155  Q
     ||||    
T  45197740 tattt 45197744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 34133160 - 34133256
Alignment:
Q  52 caattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttata 150  Q
    ||||||||||||||||| ||||    ||||||| || |||| ||||| ||||||||||||||  ||||||||||  | |||||||| ||||| |||||||    
T  34133160 caattcaatatatttcattttac---atttatgatagtggagaatgcgccaatacttaacaagtgcacttaaaattatttttctctctcctttatttata 34133256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 155
Target Start/End: Complemental strand, 138737 - 138674
Alignment:
Q  91 gaaaatgcaccaatacttaacaaaagcacttaaaacaattttctctatccttcatttatacattt 155  Q
    |||||| ||||||||| |||||||| |||||||||  ||||| ||| | ||||||||||||||||    
T  138737 gaaaatccaccaatacataacaaaaacacttaaaatcatttt-tctcttcttcatttatacattt 138674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 126
Target Start/End: Original strand, 8618200 - 8618232
Alignment:
Q  94 aatgcaccaatacttaacaaaagcacttaaaac 126  Q
    |||||||||||||||||||||| ||||||||||    
T  8618200 aatgcaccaatacttaacaaaaacacttaaaac 8618232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 176
Target Start/End: Complemental strand, 27973737 - 27973633
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt-ctctatccttcatttatacattt-----aataaatgtgaaatga 171  Q
    ||||||| |||||| ||||| | |||||||| |||| | |||||||||| ||||| ||| |||||||| | ||||||||     ||||| ||||||||||    
T  27973737 atttatgataatggtaaatggatcaatacttgacaagaacacttaaaaccatttttctccatccttcactaatacatttttcttaataagtgtgaaatga 27973638  T
Q  172 gcaaa 176  Q
    |||||    
T  27973637 gcaaa 27973633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 176
Target Start/End: Complemental strand, 28031006 - 28030902
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt-ctctatccttcatttatacattt-----aataaatgtgaaatga 171  Q
    ||||||| |||||| ||||| | |||||||| |||| | |||||||||| ||||| ||| |||||||| | ||||||||     ||||| ||||||||||    
T  28031006 atttatgataatggtaaatggatcaatacttgacaagaacacttaaaaccatttttctccatccttcactaatacatttttcttaataagtgtgaaatga 28030907  T
Q  172 gcaaa 176  Q
    |||||    
T  28030906 gcaaa 28030902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 149
Target Start/End: Complemental strand, 31410643 - 31410587
Alignment:
Q  94 aatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttat 149  Q
    |||||||||||| ||||||||| ||||||||||   |||||||| ||||||||||||    
T  31410643 aatgcaccaatatttaacaaaaacacttaaaactgtttttctctctccttcatttat 31410587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 78 - 151
Target Start/End: Complemental strand, 4360459 - 4360385
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatac 151  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||| || |||||||| || |||||||||||    
T  4360459 atttatgctagtggagaatgcaccaatacttaacaaaagcacttaaaaccatttttctctttcattcatttatac 4360385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 18849810 - 18849732
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaat-tttctctatccttcatttatacattt 155  Q
    ||||||| || |||| |||||||||||||||||||| |||||||||||| || ||||| | ||||||||||||||||||    
T  18849810 atttatgatagtggagaatgcaccaatacttaacaagagcacttaaaaccatatttctttctccttcatttatacattt 18849732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 89 - 151
Target Start/End: Complemental strand, 283517 - 283454
Alignment:
Q  89 tggaaaatgcaccaatacttaacaaaagcacttaaaacaa-ttttctctatccttcatttatac 151  Q
    |||| ||||||| |||||||||||| |||||||||||||| |||||||| ||||||||||||||    
T  283517 tggagaatgcacaaatacttaacaagagcacttaaaacaatttttctctctccttcatttatac 283454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 51 - 155
Target Start/End: Complemental strand, 38160227 - 38160125
Alignment:
Q  51 tcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaa-ttttctctatccttcatttat 149  Q
    |||||||||||||||||| ||| |   ||||||| ||||||| |||||| ||||| || |||||  |||||||||||| |||||||| ||||| ||||||    
T  38160227 tcaattcaatatatttcactttgt---atttatgataatggagaatgcatcaatatttgacaaagacacttaaaacaatttttctctctcctttatttat 38160131  T
Q  150 acattt 155  Q
    ||||||    
T  38160130 acattt 38160125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 8295085 - 8295163
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaa-ttttctctatccttcatttatacattt 155  Q
    ||||||| || |||| |||||||||||||||| ||| || ||||||||||| |||||||| || |||||||||||||||    
T  8295085 atttatgatagtggagaatgcaccaatacttatcaagaggacttaaaacaatttttctctctctttcatttatacattt 8295163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 155
Target Start/End: Complemental strand, 42185848 - 42185769
Alignment:
Q  77 tatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    |||||||| || |||| |||  ||||||||||||||| ||||||||||| || |||||| | ||||||||||||||||||    
T  42185848 tatttatgatagtggataatagaccaatacttaacaagagcacttaaaatcatttttctatctccttcatttatacattt 42185769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 28974362 - 28974440
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    ||||||| ||||||| |||||||||||||||||||| | ||||||||| || |||| |||  | |||||||||||||||    
T  28974362 atttatgataatggagaatgcaccaatacttaacaacaacacttaaaaccacttttatctccctttcatttatacattt 28974440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 132
Target Start/End: Original strand, 41436537 - 41436591
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt 132  Q
    ||||||| || |||| ||||||||||||| ||||||||||||||||||| |||||    
T  41436537 atttatgatagtggagaatgcaccaatacataacaaaagcacttaaaaccatttt 41436591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 49448763 - 49448809
Alignment:
Q  4 ttttgtaaaaaattattgttttaaaataacttatccatttcactttt 50  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||||    
T  49448763 ttttgtaaaaaattattttcttaaaataactgatccatttcactttt 49448809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 49448897 - 49448975
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    ||||||| |||| || ||||||| ||||||| |||| ||||||||||| || |||||||| ||||||| ||||||||||    
T  49448897 atttatgataatagagaatgcacaaatacttgacaagagcacttaaaaccatttttctctctccttcacttatacattt 49448975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 49812285 - 49812363
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttatacattt 155  Q
    ||||||| || |||| ||||||||||||||||||||  ||||||||||| | |||| ||| ||||||||||||| ||||    
T  49812285 atttatgatagtggataatgcaccaatacttaacaagtgcacttaaaactatttttttctctccttcatttataaattt 49812363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 54729535 - 54729457
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttatacattt 155  Q
    ||||||| || |||| ||| ||| |||||||||||||| |||||||||| | |||||||| || |||||||||||||||    
T  54729535 atttatgatagtggagaatacactaatacttaacaaaaacacttaaaactatttttctctctctttcatttatacattt 54729457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 4727577 - 4727654
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaattttctctatccttcatttatacattt 155  Q
    ||||||| |||||||||||||| ||||| ||||||| | || ||||| || |||||||| ||||||| ||||| ||||    
T  4727577 atttatgataatggaaaatgcatcaatatttaacaagaacatttaaatcatttttctctctccttcaattatatattt 4727654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 181
Target Start/End: Original strand, 17237123 - 17237208
Alignment:
Q  102 aatacttaacaaaagcacttaaaac-aattttctctatccttcatttatacat-----ttaataaatgtgaaatgagcaaatgact 181  Q
    |||||||||||||| |||||||||| | |||||||| ||||||||||||| ||     ||||||  ||||||||||||||||||||    
T  17237123 aatacttaacaaaatcacttaaaactatttttctctctccttcatttatatatttttcttaataggtgtgaaatgagcaaatgact 17237208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 22872439 - 22872359
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaa--agcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    ||||||| ||||||| ||||||||||||||| |||||  ||||||||||| || |||||||| | ||||| ||||||||||    
T  22872439 atttatgataatggagaatgcaccaatacttgacaaacgagcacttaaaaccatttttctctcttcttcacttatacattt 22872359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 155
Target Start/End: Original strand, 41203767 - 41203871
Alignment:
Q  49 tttcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcattt 147  Q
    ||||||||||||||||| || ||| |   ||||||| || || | |||||| ||||||||||||| |||||| |||| || |||||| | ||||||||||    
T  41203767 tttcaattcaatatattccactttgt---atttatggtagtgaagaatgcatcaatacttaacaagagcactaaaaaccatttttctatctccttcattt 41203863  T
Q  148 atacattt 155  Q
    ||||||||    
T  41203864 atacattt 41203871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 49306664 - 49306721
Alignment:
Q  99 accaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    ||||||||||||||| ||||||||||| || |||||||| || |||||||||||||||    
T  49306664 accaatacttaacaagagcacttaaaaccatttttctctctctttcatttatacattt 49306721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 151
Target Start/End: Complemental strand, 39976430 - 39976371
Alignment:
Q  89 tggaaaatgcaccaatacttaacaaaagcacttaaaacaattttctctatccttcatttatac 151  Q
    |||| |||||||||||||||||||| ||||||||||||    |||||| ||||||||||||||    
T  39976430 tggagaatgcaccaatacttaacaagagcacttaaaac---cttctctctccttcatttatac 39976371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 155
Target Start/End: Original strand, 4357622 - 4357701
Alignment:
Q  77 tatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    |||||||| || || | ||| |||||||||||||||||| ||||||||| ||  ||||||| ||||||||||||| ||||    
T  4357622 tatttatgatagtgaagaatccaccaatacttaacaaaaacacttaaaatcatctttctctctccttcatttatatattt 4357701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 132
Target Start/End: Original strand, 33047547 - 33047602
Alignment:
Q  77 tatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt 132  Q
    |||||||| || |||| |||  |||||||||||||||||||||||||||| |||||    
T  33047547 tatttatgatagtggagaatctaccaatacttaacaaaagcacttaaaaccatttt 33047602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 155
Target Start/End: Complemental strand, 35909613 - 35909546
Alignment:
Q  89 tggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    ||||||||||||||||||||||||||  |||||||||  | |||| ||| || |||||||||||||||    
T  35909613 tggaaaatgcaccaatacttaacaaatacacttaaaattatttttatctttcattcatttatacattt 35909546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 155
Target Start/End: Original strand, 38977063 - 38977126
Alignment:
Q  93 aaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttatacattt 155  Q
    |||||||||||||||||| ||  ||||||||||| | |||||||| | ||||||||||||||||    
T  38977063 aaatgcaccaatacttaagaagtgcacttaaaactatttttctctcttcttcatttatacattt 38977126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 26185238 - 26185316
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt-ctctatccttcatttatacattt 155  Q
    ||||||| || |||| |||  ||||||||||||||| || | ||||||| ||||| |||| ||||||||||||||||||    
T  26185238 atttatgatagtggagaatagaccaatacttaacaagagtatttaaaaccatttttctctctccttcatttatacattt 26185316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 30568735 - 30568797
Alignment:
Q  94 aatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    ||||||| |||||||||||| | ||||||||| || |||||||| |||||| |||||||||||    
T  30568735 aatgcactaatacttaacaataacacttaaaaccatttttctctttccttcctttatacattt 30568797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 39979836 - 39979914
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttatacattt 155  Q
    ||||||| || |||| |||||||| |||||||||||  ||||||||||| | |||||| | | ||||||||||||||||    
T  39979836 atttatgatagtggagaatgcaccgatacttaacaagtgcacttaaaactatttttctttctacttcatttatacattt 39979914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 41710195 - 41710117
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    ||||||| || ||||||||  ||||||| ||||||| ||||||||||| || |||| ||| | ||||||||||||||||    
T  41710195 atttatgatagtggaaaatagaccaataattaacaagagcacttaaaaccatttttttctctgcttcatttatacattt 41710117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 126
Target Start/End: Original strand, 3686078 - 3686115
Alignment:
Q  89 tggaaaatgcaccaatacttaacaaaagcacttaaaac 126  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  3686078 tggagaatgcaccaatacttaacaaaagtacttaaaac 3686115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 28279889 - 28279946
Alignment:
Q  74 ttatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaattt 131  Q
    ||||||||||| ||| | |||||||||||||||||||||||  |||| ||||| ||||    
T  28279889 ttatatttatgataaagaaaaatgcaccaatacttaacaaagacactcaaaactattt 28279946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 155
Target Start/End: Complemental strand, 42024231 - 42024174
Alignment:
Q  99 accaatacttaacaaaagcacttaaaacaatttt-ctctatccttcatttatacattt 155  Q
    ||||||||||||||| || | ||||||| ||||| |||| ||||||||||||||||||    
T  42024231 accaatacttaacaagagtagttaaaaccatttttctctctccttcatttatacattt 42024174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 125
Target Start/End: Original strand, 27977214 - 27977250
Alignment:
Q  89 tggaaaatgcaccaatacttaacaaaagcacttaaaa 125  Q
    |||| |||||||||||||||||||||| |||||||||    
T  27977214 tggagaatgcaccaatacttaacaaaaacacttaaaa 27977250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 176
Target Start/End: Complemental strand, 52677082 - 52676978
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacat-----ttaataaatgtgaaatga 171  Q
    ||||||| |||||  ||||||| ||||||||| ||| ||||||||||| || |||||||| || |||| | ||||||     ||||||||| ||||||||    
T  52677082 atttatgataatgataaatgcatcaatacttatcaagagcacttaaaatcatttttctctttcattcactaatacatttttcttaataaatatgaaatga 52676983  T
Q  172 gcaaa 176  Q
    |||||    
T  52676982 gcaaa 52676978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 28572264 - 28572341
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaattttctctatccttcatttatacattt 155  Q
    ||||||| || |||| |||||||||||||||||||| |||||||||||  ||||||||| ||||| ||||||||||||    
T  28572264 atttatgatagtggagaatgcaccaatacttaacaagagcacttaaaatcattttctctctcctttatttatacattt 28572341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 51 - 155
Target Start/End: Original strand, 23684991 - 23685093
Alignment:
Q  51 tcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttat 149  Q
    |||||||||||||||||| |||     ||||||| || |||| ||||||| |||||||||||||| |||||||||| |||||||||| ||||| ||||||    
T  23684991 tcaattcaatatatttcactttgc---atttatgatagtggagaatgcactaatacttaacaaaaacacttaaaactaattttctctctcctttatttat 23685087  T
Q  150 acattt 155  Q
    ||||||    
T  23685088 acattt 23685093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 155
Target Start/End: Complemental strand, 30757642 - 30757541
Alignment:
Q  52 caattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttata 150  Q
    |||||||||||||| |||||||    ||||||| || |||||||||||  ||||||||||||  ||||||||||| | |||||||| |||||||||||||    
T  30757642 caattcaatatattccaatttac---atttatgatagtggaaaatgcattaatacttaacaagtgcacttaaaactatttttctctctccttcatttata 30757546  T
Q  151 cattt 155  Q
    |||||    
T  30757545 cattt 30757541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 51 - 155
Target Start/End: Original strand, 28301466 - 28301568
Alignment:
Q  51 tcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttat 149  Q
    |||||||||||||||||| |||     ||||||| || |||| |||  ||||||||||||||| ||||||||||| || |||||||| ||||||||||||    
T  28301466 tcaattcaatatatttcactttgc---atttatgatagtggagaatagaccaatacttaacaagagcacttaaaaccatttttctctttccttcatttat 28301562  T
Q  150 acattt 155  Q
    ||||||    
T  28301563 acattt 28301568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 2882041 - 2882119
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    ||||||| || |||| |||||||||||||||||||| ||||||||||| || |||||| | || |||||||||||||||    
T  2882041 atttatgatagtggagaatgcaccaatacttaacaagagcacttaaaatcatttttctatctctttcatttatacattt 2882119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 155
Target Start/End: Complemental strand, 24775886 - 24775781
Alignment:
Q  48 ttttcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatt 146  Q
    |||| |||||||||||||||| ||||    ||||||| || |||| ||| ||||||||||||||||  ||||||||||  | |||||||| |||||||||    
T  24775886 tttttaattcaatatatttcactttac---atttatgatagtggagaatacaccaatacttaacaagtgcacttaaaattatttttctctctccttcatt 24775790  T
Q  147 tatacattt 155  Q
    |||||||||    
T  24775789 tatacattt 24775781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 181
Target Start/End: Complemental strand, 43950499 - 43950390
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttataca-----tttaataaatgtgaaatga 171  Q
    ||||||| ||||||||||| || ||||||||||||||| || ||||||| | |||||||| || |||| |||||||     |||||||| ||||||||||    
T  43950499 atttatgttaatggaaaatacatcaatacttaacaaaaacatttaaaactatttttctctctctttcacttatacattttttttaataagtgtgaaatga 43950400  T
Q  172 gcaaatgact 181  Q
    | ||||||||    
T  43950399 gtaaatgact 43950390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 155
Target Start/End: Complemental strand, 15859385 - 15859318
Alignment:
Q  89 tggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttatacattt 155  Q
    |||| ||||| ||||||||||||||||| ||||||||| | |||||||| ||||||||||||| ||||    
T  15859385 tggagaatgccccaatacttaacaaaagtacttaaaactatttttctctctccttcatttatatattt 15859318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 155
Target Start/End: Original strand, 36155580 - 36155647
Alignment:
Q  89 tggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    |||| ||| |||||||||||||||| ||||||||||| || |||| ||| ||||||||||||||||||    
T  36155580 tggagaatacaccaatacttaacaagagcacttaaaatcatttttttctctccttcatttatacattt 36155647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 40965093 - 40965148
Alignment:
Q  101 caatacttaacaaaagcacttaaaac-aattttctctatccttcatttatacattt 155  Q
    |||||||||||||| ||||||||||| | |||||||| ||||||||||||||||||    
T  40965093 caatacttaacaaatgcacttaaaactatttttctctctccttcatttatacattt 40965148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 565145 - 565223
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    ||||||| || |||| |||||||||||||||||||| | ||||||||| || |||||| | |||||||| |||||||||    
T  565145 atttatgatagtggagaatgcaccaatacttaacaagaacacttaaaatcatttttctttctccttcatatatacattt 565223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 2756730 - 2756808
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaa-ttttctctatccttcatttatacattt 155  Q
    ||||||| |||||| |||||||| ||||||| |||| ||||||||||| || |||||||| | ||||||| ||||||||    
T  2756730 atttatgataatggtaaatgcactaatacttgacaagagcacttaaaataatttttctctcttcttcattaatacattt 2756808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 3100456 - 3100534
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    ||||||| || |||| |||||| ||||||||||||| | ||||||||| || |||||||| ||||||||||||| ||||    
T  3100456 atttatgatagtggagaatgcagcaatacttaacaagatcacttaaaatcatttttctctctccttcatttatatattt 3100534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 132
Target Start/End: Complemental strand, 18181264 - 18181210
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt 132  Q
    ||||||| || |||| ||||||||||||| ||||||||||||||||||| |||||    
T  18181264 atttatgatagtggagaatgcaccaatacataacaaaagcacttaaaaccatttt 18181210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 89 - 150
Target Start/End: Complemental strand, 28108415 - 28108353
Alignment:
Q  89 tggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttata 150  Q
    |||| ||||||||||||||||||||  ||||||||||| | |||||||| |||||||||||||    
T  28108415 tggagaatgcaccaatacttaacaagtgcacttaaaactatttttctctctccttcatttata 28108353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 190
Target Start/End: Original strand, 28527036 - 28527138
Alignment:
Q  94 aatgcaccaatacttaacaaaagcacttaaaacaattttctcta-tccttcatttatacattt-----aataaatgtgaaatgagcaaatgactaagtga 187  Q
    ||||||| |||||||||||| |||||||||||| ||||| | |  ||||||||||||||||||     ||||  |||||||||||||||||||| ||| |    
T  28527036 aatgcacgaatacttaacaagagcacttaaaaccatttttttttctccttcatttatacatttttcttaatatgtgtgaaatgagcaaatgactcagtta 28527135  T
Q  188 att 190  Q
    |||    
T  28527136 att 28527138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 155
Target Start/End: Complemental strand, 28925922 - 28925821
Alignment:
Q  52 caattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttata 150  Q
    ||||||||||||||||| ||||  ||   |||| || |||| |||||| |||||||||||||  ||||||||||| | |||||||| ||||| |||||||    
T  28925922 caattcaatatatttcactttacaat---tatgatagtggagaatgcatcaatacttaacaagtgcacttaaaactatttttctctctcctttatttata 28925826  T
Q  151 cattt 155  Q
    |||||    
T  28925825 cattt 28925821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 155
Target Start/End: Complemental strand, 43077804 - 43077699
Alignment:
Q  48 ttttcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatt 146  Q
    ||||||||||||||||||||| |   ||| |||||||  | ||||||||||||||||| |||||||   || ||||||| | |||||||| || ||||||    
T  43077804 ttttcaattcaatatatttcact---ttacatttatgacagtggaaaatgcaccaatagttaacaagtacatttaaaactatttttctctctcattcatt 43077708  T
Q  147 tatacattt 155  Q
    |||||||||    
T  43077707 tatacattt 43077699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 7650026 - 7649949
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaattttctctatccttcatttatacattt 155  Q
    ||||||| || |||| |||||| || |||||||||| ||||||||||| | ||| | || ||||||||||||||||||    
T  7650026 atttatgatagtggagaatgcatcagtacttaacaagagcacttaaaatattttgcgctctccttcatttatacattt 7649949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 33755334 - 33755391
Alignment:
Q  99 accaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    ||||||||||||||| | ||||||||| || |||||||| ||||||||||||||||||    
T  33755334 accaatacttaacaataacacttaaaatcatttttctctctccttcatttatacattt 33755391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 13375240 - 13375161
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatac-ttaacaaaagcacttaaaacaattt-tctctatccttcatttatacattt 155  Q
    ||||||| || |||| ||||||||||||| |||||||  ||||||||||  |||| ||||| ||||||||||||||||||    
T  13375240 atttatgatagtggagaatgcaccaataccttaacaactgcacttaaaattatttatctctctccttcatttatacattt 13375161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 155
Target Start/End: Complemental strand, 37247959 - 37247857
Alignment:
Q  51 tcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttat 149  Q
    |||||||||||||||||| |||     ||||||| || |||| |||  ||||||||||||||| |||||||||||| | |||| ||| |||||| |||||    
T  37247959 tcaattcaatatatttcactttgc---atttatgatagtggagaatagaccaatacttaacaagagcacttaaaactatttttttctttccttcttttat 37247863  T
Q  150 acattt 155  Q
    ||||||    
T  37247862 acattt 37247857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 155
Target Start/End: Complemental strand, 5211993 - 5211931
Alignment:
Q  94 aatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttatacattt 155  Q
    ||||||| |||||||||||| |||||||||||| | ||||| || | ||||||||||||||||    
T  5211993 aatgcacaaatacttaacaagagcacttaaaactatttttccctcttcttcatttatacattt 5211931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 36103356 - 36103274
Alignment:
Q  74 ttatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    ||||||| ||| || |||| |||||| | ||||||||||| | ||||||||| || |||||||| |||||||||| |||||||    
T  36103356 ttatattcatgatagtggagaatgcatcgatacttaacaagaacacttaaaatcatttttctctctccttcatttgtacattt 36103274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 41436158 - 41436212
Alignment:
Q  101 caatacttaacaaaagcacttaaaacaattttctctatccttcatttatacattt 155  Q
    ||||||||||||||| |||||||||  ||||||||| |  |||||||||||||||    
T  41436158 caatacttaacaaaaacacttaaaattattttctctctaattcatttatacattt 41436212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 44534534 - 44534456
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    ||||||| || |||| |||| ||||||||||||||| | || |||||| || |||| ||| ||||||||||||||||||    
T  44534534 atttatgatagtggagaatgtaccaatacttaacaagaacatttaaaatcatttttttctgtccttcatttatacattt 44534456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 153
Target Start/End: Complemental strand, 435153 - 435053
Alignment:
Q  51 tcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttat 149  Q
    |||||||||||||||||| ||||    ||||||| || |||| ||||||| |||| |||||||  ||||||||||| | |||| ||| || |||||||||    
T  435153 tcaattcaatatatttcactttac---atttatgatagtggagaatgcactaatatttaacaagtgcacttaaaactatttttgtctctctttcatttat 435057  T
Q  150 acat 153  Q
    ||||    
T  435056 acat 435053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 51 - 148
Target Start/End: Original strand, 17342860 - 17342955
Alignment:
Q  51 tcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcattta 148  Q
    |||||||||||||||||| ||| |   ||||||| ||||||| |||||||||||||||||||||| ||||||||| || ||||| || |||||||||||    
T  17342860 tcaattcaatatatttcactttgt---atttatgataatggagaatgcaccaatacttaacaaaaacacttaaaaccatttttccctctccttcattta 17342955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 51 - 155
Target Start/End: Original strand, 32587797 - 32587899
Alignment:
Q  51 tcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttat 149  Q
    |||||||||||||||||| |||     ||||||| |||||||||||||| ||||||||||||||| |||||||||  | ||||||||  |||||||||||    
T  32587797 tcaattcaatatatttcactttgc---atttatgataatggaaaatgcatcaatacttaacaaaaacacttaaaattatttttctctcaccttcatttat 32587893  T
Q  150 acattt 155  Q
    ||||||    
T  32587894 acattt 32587899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 155
Target Start/End: Complemental strand, 50267513 - 50267412
Alignment:
Q  52 caattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttata 150  Q
    ||||||||||||||||| ||||    ||||||| ||||||| ||||||||||||||||||||  ||||||||||| | ||||||||  | ||||||||||    
T  50267513 caattcaatatatttcactttac---atttatgataatggagaatgcaccaatacttaacaagtgcacttaaaactatttttctctcactttcatttata 50267417  T
Q  151 cattt 155  Q
    |||||    
T  50267416 cattt 50267412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 52830466 - 52830388
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    ||||||| || |||||||||||||||||||||||||| ||||| ||||  | |||||||| ||||||||||||||||||    
T  52830466 atttatgatagtggaaaatgcaccaatacttaacaaatgcactcaaaattatttttctctctccttcatttatacattt 52830388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 26756005 - 26756109
Alignment:
Q  48 ttttcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt-ctctatccttcatt 146  Q
    |||||||||||||||||| || |||||   ||||||| || |||| |||||| |||||||||||||  ||||||||||| ||||| |||| || ||||||    
T  26756005 ttttcaattcaatatattacactttat---atttatgatagtggagaatgcatcaatacttaacaagtgcacttaaaactattttcctctctcattcatt 26756101  T
Q  147 tatacatt 154  Q
    ||||||||    
T  26756102 tatacatt 26756109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 155
Target Start/End: Complemental strand, 28277117 - 28277009
Alignment:
Q  48 ttttcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaattttct----ctatccttc 143  Q
    ||||||||||||||||||||| ||||    ||||||| || |||| ||||||||||||||||||||  ||||||||||| ||||| |    || ||||||    
T  28277117 ttttcaattcaatatatttcactttac---atttatgatactggagaatgcaccaatacttaacaagtgcacttaaaactattttttttttctctccttc 28277021  T
Q  144 atttatacattt 155  Q
    ||||||||||||    
T  28277020 atttatacattt 28277009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 89 - 155
Target Start/End: Original strand, 32348285 - 32348352
Alignment:
Q  89 tggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    ||||||||  ||||||||||||||| ||||||||||| || |||||||| ||||||||||||||||||    
T  32348285 tggaaaatagaccaatacttaacaagagcacttaaaaccatttttctctctccttcatttatacattt 32348352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 78 - 156
Target Start/End: Complemental strand, 51749235 - 51749156
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattta 156  Q
    ||||||| ||||||| |||  ||||||||||||||| | ||||||||| || |||||||| |||||||||||||||||||    
T  51749235 atttatgataatggagaataaaccaatacttaacaagaacacttaaaatcagttttctctctccttcatttatacattta 51749156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 3555607 - 3555529
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    ||||||| || |||| |||  |||||||||||| |||||||||||||| || ||||| |||||||||||||||||||||    
T  3555607 atttatgatagtggagaatagaccaatacttaaaaaaagcacttaaaaccatttttccctatccttcatttatacattt 3555529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 42926190 - 42926268
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    ||||||| || |||| |||||||| ||||||||||||| ||||||||| || |||||||| || |||||||||||||||    
T  42926190 atttatgatagtggagaatgcaccgatacttaacaaaaacacttaaaatcatttttctctttcattcatttatacattt 42926268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 21304862 - 21304781
Alignment:
Q  74 ttatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaattttctctatccttcatttatacattt 155  Q
    ||||||||||| ||| | |||||||| |||||||| |||||  |||| ||||||||||| ||| || |||||||||||||||    
T  21304862 ttatatttatgataaagaaaaatgcatcaatacttgacaaagacactcaaaacaattttatctctctttcatttatacattt 21304781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 181
Target Start/End: Original strand, 49945004 - 49945097
Alignment:
Q  94 aatgcaccaatacttaacaaaagcacttaaaacaatttt-ctctatccttcatttatacattt-----aataaatgtgaaatgagcaaatgact 181  Q
    ||||||| |||||||||||| |||||||||||| ||||| |||| | ||||||||||||||||     ||||  ||||||||||||||||||||    
T  49945004 aatgcacaaatacttaacaagagcacttaaaaccatttttctctcttcttcatttatacatttttcttaatatgtgtgaaatgagcaaatgact 49945097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 13500909 - 13500862
Alignment:
Q  4 ttttgtaaaaaattattgttttaaaataacttatccatttcacttttt 51  Q
    |||||||||||| ||||||  |||||||||||||||||||||||||||    
T  13500909 ttttgtaaaaaaatattgtcctaaaataacttatccatttcacttttt 13500862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 155
Target Start/End: Complemental strand, 19532991 - 19532893
Alignment:
Q  55 ttcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt-ctctatccttcatttatacat 153  Q
    |||||||||||||| ||||    ||||||| || |||| |||| |||||||||||||||   |||||||||| ||||| |||||||||||||||||| ||    
T  19532991 ttcaatatatttcactttac---atttatgatagtggagaatgaaccaatacttaacaagtacacttaaaactatttttctctatccttcatttatatat 19532895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 195
Target Start/End: Original strand, 27391403 - 27391526
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacatt-----taataaatgtgaaatga 171  Q
    ||||||| |||| | ||||| |||||||||||| || ||||||||||| || |||||||| ||||||| |||||||||     |||||| |||||| |||    
T  27391403 atttatgataatagtaaatgaaccaatacttaataagagcacttaaaatcatttttctctctccttcacttatacatttttcgtaataagtgtgaattga 27391502  T
Q  172 gcaaatgactaagtgaatttagga 195  Q
     ||||||||| | | |||||||||    
T  27391503 acaaatgactcacttaatttagga 27391526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 17724766 - 17724688
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaa-ttttctctatccttcatttatacattt 155  Q
    ||||||| || |||| |||||| ||||| ||||||| |||||||||||||| |||||||| |||||||||  |||||||    
T  17724766 atttatggtagtggagaatgcatcaataattaacaagagcacttaaaacaatttttctctctccttcattattacattt 17724688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 28839395 - 28839473
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttatacattt 155  Q
    ||||||| || |||| |||  ||||||||||||||| |||| ||||||| | |||||||| ||||||||||||||||||    
T  28839395 atttatgatagtggagaatagaccaatacttaacaagagcatttaaaactatttttctctctccttcatttatacattt 28839473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 155
Target Start/End: Complemental strand, 36467270 - 36467169
Alignment:
Q  52 caattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttata 150  Q
    ||||||||||||||||| ||||    ||||||  || |||| ||| ||||||||||||||||  ||||||||||| | |||||||| || ||||||||||    
T  36467270 caattcaatatatttcactttac---atttatcatagtggagaatccaccaatacttaacaagtgcacttaaaactatttttctctctcattcatttata 36467174  T
Q  151 cattt 155  Q
    |||||    
T  36467173 cattt 36467169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 52432384 - 52432446
Alignment:
Q  94 aatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    |||||| ||||||||||||| ||||||||||| || |||||||| | ||||||||||||||||    
T  52432384 aatgcatcaatacttaacaagagcacttaaaatcatttttctctcttcttcatttatacattt 52432446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 2571435 - 2571495
Alignment:
Q  94 aatgcaccaatacttaacaaaagcacttaaaacaattttctctatccttcatttatacattt 155  Q
    |||||||||||||||||||| | |||| ||||| ||||||||| || |||||||||||||||    
T  2571435 aatgcaccaatacttaacaaga-cactcaaaactattttctctctctttcatttatacattt 2571495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 155
Target Start/End: Original strand, 43895923 - 43895980
Alignment:
Q  98 caccaatacttaacaaaagcacttaaaacaattttctctatccttcatttatacattt 155  Q
    |||||||||||||||||| ||| |||||| ||||||||| || ||||| |||||||||    
T  43895923 caccaatacttaacaaaaacacataaaactattttctctctctttcatctatacattt 43895980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 10370213 - 10370158
Alignment:
Q  102 aatacttaacaaaagcacttaaaacaa--ttttctctatccttcatttatacattt 155  Q
    ||||||||||||||||||||||||| |  |||||||| ||||| ||||||||||||    
T  10370213 aatacttaacaaaagcacttaaaactattttttctctctcctttatttatacattt 10370158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 176
Target Start/End: Original strand, 34813973 - 34814077
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttatacat-----ttaataaatgtgaaatga 171  Q
    ||||||| |||||  |||||||| |||||||||||| | |||||||||| | |||||||| ||||||| | ||||||     ||||||| ||||||||||    
T  34813973 atttatgataatgataaatgcactaatacttaacaagaacacttaaaactatttttctctctccttcactaatacatttttcttaataagtgtgaaatga 34814072  T
Q  172 gcaaa 176  Q
    |||||    
T  34814073 gcaaa 34814077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 132
Target Start/End: Original strand, 8773309 - 8773352
Alignment:
Q  89 tggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt 132  Q
    |||| |||||||||||||||||||| |||||||||||| |||||    
T  8773309 tggagaatgcaccaatacttaacaagagcacttaaaactatttt 8773352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 45889300 - 45889221
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatcc-ttcatttatacattt 155  Q
    ||||||| ||||||| |||  ||||||| ||||||| ||||||||||| || |||||||| ||| |||||||||||||||    
T  45889300 atttatgataatggagaatagaccaatagttaacaagagcacttaaaaccatttttctctctcctttcatttatacattt 45889221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 190
Target Start/End: Original strand, 46536395 - 46536514
Alignment:
Q  77 tatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacat-----ttaataaatgtgaaatg 170  Q
    |||||||| || |||| ||| || ||||| ||||||| ||||||||||| || |||||||| |||||||| |||| ||     |||||| |||||||| |    
T  46536395 tatttatgatagtggagaatacaacaatatttaacaagagcacttaaaaccatttttctctttccttcatctataaatttttcttaatacatgtgaaacg 46536494  T
Q  171 agcaaatgactaagtgaatt 190  Q
    ||||||||||| ||| ||||    
T  46536495 agcaaatgactcagttaatt 46536514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 5040627 - 5040549
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    ||||||| || |||| |||||| ||||||||||||| | ||| ||||| || |||||||| || |||||||||||||||    
T  5040627 atttatgatagtggagaatgcatcaatacttaacaagatcacctaaaaccatttttctctctcattcatttatacattt 5040549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 5442396 - 5442474
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    ||||||| || |||| ||||||| |||||||||||| |  |||||||| || |||||||| || |||||||||||||||    
T  5442396 atttatgatagtggagaatgcactaatacttaacaagataacttaaaaccatttttctctctcattcatttatacattt 5442474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 132
Target Start/End: Complemental strand, 34877142 - 34877088
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt 132  Q
    ||||||| |||| |||||||||| |||| ||||| | ||||||||||||||||||    
T  34877142 atttatgataatagaaaatgcacgaatatttaaccagagcacttaaaacaatttt 34877088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 8327794 - 8327851
Alignment:
Q  99 accaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    ||||||||||||||| |||||||||||  | |||||||| || |||||||||||||||    
T  8327794 accaatacttaacaagagcacttaaaattatttttctctctcattcatttatacattt 8327851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 131
Target Start/End: Complemental strand, 40019116 - 40019059
Alignment:
Q  74 ttatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaattt 131  Q
    ||||||||||| |||||  ||||||||||||| |||||||||  | ||||||||||||    
T  40019116 ttatatttatgataatgttaaatgcaccaatatttaacaaaaagatttaaaacaattt 40019059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 155
Target Start/End: Original strand, 40019816 - 40019893
Alignment:
Q  79 tttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaa-ttttctctatccttcatttatacattt 155  Q
    |||||| ||||||  ||| ||| ||||||| |||| |||||||||||||| |||||||| || |||| ||||||||||    
T  40019816 tttatgataatggtgaatacacaaatacttgacaagagcacttaaaacaatttttctctctcattcacttatacattt 40019893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 176
Target Start/End: Complemental strand, 3718901 - 3718798
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttatacat-----ttaataaatgtgaaatga 171  Q
    ||||||| |||||  |||||||| ||||||| |||| |||||||||||| | |||||||| | ||||||| ||||||     ||||||| ||||||||||    
T  3718901 atttatgataatgataaatgcacaaatacttgacaagagcacttaaaactatttttctctct-cttcattaatacatttttcttaataagtgtgaaatga 3718803  T
Q  172 gcaaa 176  Q
    |||||    
T  3718802 gcaaa 3718798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 77 - 155
Target Start/End: Complemental strand, 11099530 - 11099451
Alignment:
Q  77 tatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttatacattt 155  Q
    |||||||| || |||| |||||||||||||||||||||| |||||||||| | |||||||| || |||||||||||||||    
T  11099530 tatttatgatagtggagaatgcaccaatacttaacaaaaacacttaaaactatttttctctctctttcatttatacattt 11099451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 3725242 - 3725320
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    ||||||| || |||| |||||||||||||||||||| ||||||||||| || |||||||| |||||| |||||||||||    
T  3725242 atttatgatagtggagaatgcaccaatacttaacaatagcacttaaaaccatttttctctctccttcctttatacattt 3725320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 155
Target Start/End: Original strand, 7613740 - 7613841
Alignment:
Q  52 caattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttata 150  Q
    ||||||||||||||||| ||||    ||||||| || |||| ||||||||||||||||||||  ||||||||||| | |||||||| ||||| |||||||    
T  7613740 caattcaatatatttcactttac---atttatgatagtggagaatgcaccaatacttaacaagtgcacttaaaactatttttctctttccttaatttata 7613836  T
Q  151 cattt 155  Q
    |||||    
T  7613837 cattt 7613841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 89 - 155
Target Start/End: Original strand, 39008199 - 39008266
Alignment:
Q  89 tggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    |||| |||| ||||||||||||||| ||||||||||| || |||||||| ||||||||||||||||||    
T  39008199 tggagaatgaaccaatacttaacaagagcacttaaaaccatttttctctctccttcatttatacattt 39008266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 89 - 181
Target Start/End: Original strand, 15814709 - 15814807
Alignment:
Q  89 tggaaaatgcaccaatacttaacaaaagcacttaaaacaa-ttttctctatccttcatttataca-----tttaataaatgtgaaatgagcaaatgact 181  Q
    |||||||| ||| |||||||||||| ||| ||||||| || |||||||| |||||||||||||||     ||||||| ||||||||| |||||||||||    
T  15814709 tggaaaatacacaaatacttaacaagagcgcttaaaataatttttctctctccttcatttatacattttttttaatatatgtgaaataagcaaatgact 15814807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 52 - 155
Target Start/End: Original strand, 25814397 - 25814498
Alignment:
Q  52 caattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttata 150  Q
    ||||||||||||||||| ||||    ||||||| || |||| |||| |||||||||||||||  ||||||||||| | |||||||| ||||||||||||     
T  25814397 caattcaatatatttcactttac---atttatgatagtggataatgtaccaatacttaacaagtgcacttaaaactatttttctctctccttcatttatg 25814493  T
Q  151 cattt 155  Q
    |||||    
T  25814494 cattt 25814498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 33988256 - 33988334
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    ||||||| || |||| ||| |||||||||||||||||| ||||||||| || |||||| | ||||||||||||||||||    
T  33988256 atttatgatagtggagaatacaccaatacttaacaaaaacacttaaaaccatttttctttctccttcatttatacattt 33988334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 155
Target Start/End: Original strand, 6610871 - 6610971
Alignment:
Q  53 aattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaa-acaattttctctatccttcatttatac 151  Q
    |||||||||||||||| ||||    ||||||| || |||| ||||||||||||||||| |||| ||||||||  || |||||||| ||||||||| ||||    
T  6610871 aattcaatatatttcactttac---atttatgatagtggagaatgcaccaatacttaataaaaacacttaaactcatttttctctctccttcattgatac 6610967  T
Q  152 attt 155  Q
    ||||    
T  6610968 attt 6610971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 172
Target Start/End: Original strand, 35666940 - 35667039
Alignment:
Q  77 tatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaattttctctatccttcatttatacat-----ttaataaatgtgaaatga 171  Q
    |||||||  |||||| |||||||||||||||||| ||||||||||||||| ||||| ||| ||||||| | ||| ||     ||||||||||||||||||    
T  35666940 tatttataataatggtaaatgcaccaatacttaagaaaagcacttaaaactatttt-tctctccttcaataataaatttttcttaataaatgtgaaatga 35667038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 132
Target Start/End: Complemental strand, 8369748 - 8369694
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt 132  Q
    ||||||| || |||| |||||||||||||||||||| |||| |||||||||||||    
T  8369748 atttatgatagtggagaatgcaccaatacttaacaagagcatttaaaacaatttt 8369694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 8692870 - 8692792
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    ||||||| || |||| |||||||||||||||||||| | ||||||||| || |||||||  ||||||||||||| ||||    
T  8692870 atttatgatagtggagaatgcaccaatacttaacaagaacacttaaaaccatttttctccctccttcatttatatattt 8692792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 35646141 - 35646063
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    ||||||| || |||| |||||||||||||||||||| | ||||||||| || |||||||| || |||||||||| ||||    
T  35646141 atttatgatagtggagaatgcaccaatacttaacaagatcacttaaaatcatttttctctctcattcatttatatattt 35646063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 41184732 - 41184794
Alignment:
Q  94 aatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttatacattt 155  Q
    ||||||||||||||||||||  ||||||||||| | |||||| | ||||||||||||||||||    
T  41184732 aatgcaccaatacttaacaagtgcacttaaaactatttttctttctccttcatttatacattt 41184794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 42575690 - 42575612
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    ||||||| || |||| ||| |||||||||||| ||| ||||||||||| || |||||||| || |||||||||||||||    
T  42575690 atttatgatagtggagaatacaccaatacttaccaagagcacttaaaaccatttttctctctcattcatttatacattt 42575612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 155
Target Start/End: Original strand, 20189924 - 20190027
Alignment:
Q  51 tcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaa--ttttctctatccttcattta 148  Q
    ||||||||||||||| || ||||    ||||||| ||||||| |||||| || ||||||||||| ||||||||||| |  |||| ||| |||||||||||    
T  20189924 tcaattcaatatattccactttac---atttatgataatggagaatgcatcagtacttaacaaatgcacttaaaactattttttatctctccttcattta 20190020  T
Q  149 tacattt 155  Q
    | |||||    
T  20190021 tgcattt 20190027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 156
Target Start/End: Original strand, 32539718 - 32539797
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaat-tttctctatccttcatttatacattta 156  Q
    ||||||| || |||| ||||||||||||| ||| ||||||||||||||| || ||| ||| |||||| ||||| ||||||    
T  32539718 atttatgatagtggagaatgcaccaatacataataaaagcacttaaaaccatctttgtctctccttcgtttattcattta 32539797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 155
Target Start/End: Complemental strand, 16283623 - 16283561
Alignment:
Q  94 aatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    ||||||||||||| |||||||| || |||||| || |||| ||| ||||||||||||||||||    
T  16283623 aatgcaccaatacataacaaaatcatttaaaaccatttttttctctccttcatttatacattt 16283561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 36469146 - 36469068
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcactta-aaacaattttctctatccttcatttatacattt 155  Q
    ||||||| || |||| ||||||||||||| |||||||| |||||| || || |||| | | ||||||||||||||||||    
T  36469146 atttatgatagtggagaatgcaccaatacataacaaaaacacttataatcatttttttatctccttcatttatacattt 36469068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 181
Target Start/End: Original strand, 858391 - 858500
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaattttct-ctatccttcatttatacattt-----aataaatgtgaaatga 171  Q
    ||||||| ||||||| |||| ||||||| ||||||| |  ||||||||| ||||| | || ||||| ||||||||||||     ||||  ||||||||||    
T  858391 atttatgataatggagaatgtaccaatatttaacaagataacttaaaaccatttttttctctcctttatttatacatttttcttaatatgtgtgaaatga 858490  T
Q  172 gcaaatgact 181  Q
    ||||||||||    
T  858491 gcaaatgact 858500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 181
Target Start/End: Original strand, 42211410 - 42211494
Alignment:
Q  103 atacttaacaaaagcacttaaaacaatttt-ctctatccttcatttatacattt-----aataaatgtgaaatgagcaaatgact 181  Q
    ||||||||||| |||||||||||| ||||| |||   |||||||||||||||||     ||||  ||||||||||||||||||||    
T  42211410 atacttaacaagagcacttaaaaccatttttctcccaccttcatttatacattttttttaatatgtgtgaaatgagcaaatgact 42211494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 89 - 155
Target Start/End: Original strand, 9017868 - 9017935
Alignment:
Q  89 tggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttatacattt 155  Q
    |||| ||||||||||||||||||||||||||||||||| | |||||||| || |||||||||||||||    
T  9017868 tggagaatgcaccaatacttaacaaaagcacttaaaactatttttctctctctttcatttatacattt 9017935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 51 - 155
Target Start/End: Complemental strand, 53876511 - 53876409
Alignment:
Q  51 tcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttat 149  Q
    |||||||||||||||||| ||||    ||||||| || |||||||||||| |||| ||||||||||||||||||| || |||| ||  ||||||||||||    
T  53876511 tcaattcaatatatttcactttac---atttatgatagtggaaaatgcacaaatatttaacaaaagcacttaaaatcatttttttcactccttcatttat 53876415  T
Q  150 acattt 155  Q
    ||||||    
T  53876414 acattt 53876409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 39866604 - 39866526
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttatacattt 155  Q
    ||||||| || |||| ||| |||||||||||||||||| |||||||||| | |||||||| ||||||||||||||||||    
T  39866604 atttatgatagtggagaatacaccaatacttaacaaaatcacttaaaactatttttctctttccttcatttatacattt 39866526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 43639567 - 43639489
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    ||||||| || ||||||||||| ||||||||||||| ||||||||||| || |||||||| ||||||||||||| ||||    
T  43639567 atttatgatagtggaaaatgcatcaatacttaacaacagcacttaaaaccatttttctctctccttcatttatatattt 43639489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 54122275 - 54122197
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttatacattt 155  Q
    ||||||| || |||| |||||||||||||||||||||| || ||||||| | |||||||| ||||||||||||||||||    
T  54122275 atttatgatagtggagaatgcaccaatacttaacaaaaacatttaaaactatttttctctctccttcatttatacattt 54122197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 77 - 155
Target Start/End: Original strand, 5245467 - 5245546
Alignment:
Q  77 tatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttatacattt 155  Q
    |||||||| || |||| ||| |||||||||||||||| |||||||||||| | |||||||| |||||||| |||||||||    
T  5245467 tatttatgatattggagaatacaccaatacttaacaagagcacttaaaactatttttctctctccttcatgtatacattt 5245546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 89 - 181
Target Start/End: Original strand, 2868641 - 2868739
Alignment:
Q  89 tggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt-ctctatccttcatttatacattt-----aataaatgtgaaatgagcaaatgact 181  Q
    |||| |||||| |||||| ||||||||| ||||||||| ||||| |||| ||||||||||||||||||     ||||  ||||||||||||||||||||    
T  2868641 tggagaatgcagcaatacataacaaaagaacttaaaaccatttttctctctccttcatttatacatttttcttaatatgtgtgaaatgagcaaatgact 2868739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 11251178 - 11251100
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    ||||||| || |||| |||||||||||||||||||| ||||||||||| || |||| ||| || |||||||||||||||    
T  11251178 atttatgatagtggagaatgcaccaatacttaacaagagcacttaaaatcatttttttctctcattcatttatacattt 11251100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 155
Target Start/End: Complemental strand, 21296554 - 21296476
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    ||||||| || || |||||||||||||||||||||| |||| |||||| || ||| |||| ||||||||||||||||||    
T  21296554 atttatgatagtgaaaaatgcaccaatacttaacaagagcatttaaaatcattttcctctctccttcatttatacattt 21296476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 26134730 - 26134676
Alignment:
Q  102 aatacttaacaaaagcacttaaaacaa-ttttctctatccttcatttatacattt 155  Q
    |||||||||||| |||||||||||||| |||||||| ||||||||||||||||||    
T  26134730 aatacttaacaagagcacttaaaacaatttttctctctccttcatttatacattt 26134676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 155
Target Start/End: Original strand, 33994713 - 33994791
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    ||||||| || |||| ||||||||||||||||||||  ||||||||||  | |||||||| ||||||||||||||||||    
T  33994713 atttatgatagtggagaatgcaccaatacttaacaagtgcacttaaaattatttttctctctccttcatttatacattt 33994791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 132
Target Start/End: Original strand, 48744288 - 48744369
Alignment:
Q  48 ttttcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt 132  Q
    ||||||||||||||||||||| ||||    ||||||| || |||| |||||| |||||||||||||| ||||||||||| |||||    
T  48744288 ttttcaattcaatatatttcactttac---atttatgatagtggagaatgcatcaatacttaacaaatgcacttaaaactatttt 48744369  T

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Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 184
Target Start/End: Original strand, 10855061 - 10855162
Alignment:
Q  89 tggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt-ctctatccttcatttatacattta-----ataaatgtgaaatgagcaaatgacta 182  Q
    |||| ||||||||||||| ||| |||| |||||||||| ||||| |||| |||||||||||||||||||     |||  |||||||||| ||||||||||    
T  10855061 tggataatgcaccaatacataataaaaacacttaaaactatttttctctctccttcatttatacatttatcttaatacgtgtgaaatgatcaaatgacta 10855160  T
Q  183 ag 184  Q
    ||    
T  10855161 ag 10855162  T

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Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 181
Target Start/End: Complemental strand, 17777045 - 17776936
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt-ctctatccttcatttatacattt-----aataaatgtgaaatga 171  Q
    ||||||| || |||| ||||||| ||||||||| |||||||| |||||| ||||| |||| || |||||||||||||||     ||||  ||||||||||    
T  17777045 atttatggtagtggagaatgcacaaatacttaaaaaaagcacctaaaaccatttttctctctcattcatttatacattttttttaatacgtgtgaaatga 17776946  T
Q  172 gcaaatgact 181  Q
    ||||||||||    
T  17776945 gcaaatgact 17776936  T

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Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 181
Target Start/End: Complemental strand, 19078346 - 19078237
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt-ctctatccttcatttatacattt-----aataaatgtgaaatga 171  Q
    ||||||| || |||| ||||||| ||||||||| |||||||| |||||| ||||| |||| || |||||||||||||||     ||||  ||||||||||    
T  19078346 atttatggtagtggagaatgcacaaatacttaaaaaaagcacctaaaaccatttttctctctcattcatttatacattttttttaatacgtgtgaaatga 19078247  T
Q  172 gcaaatgact 181  Q
    ||||||||||    
T  19078246 gcaaatgact 19078237  T

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Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 155
Target Start/End: Complemental strand, 32023141 - 32023073
Alignment:
Q  89 tggaaaatgcaccaatacttaacaaaagcacttaaaac--aattttctctatccttcatttatacattt 155  Q
    |||| ||||||||||||||||||||||| |||||||||  | |||||| | ||||||||||||||||||    
T  32023141 tggagaatgcaccaatacttaacaaaagtacttaaaacttatttttctatctccttcatttatacattt 32023073  T

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Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 155
Target Start/End: Complemental strand, 32827377 - 32827277
Alignment:
Q  53 aattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttatac 151  Q
    |||||||||||||||| ||||    ||||||| || |||| ||||||||||||| ||||||  ||||||||||| | |||| ||| ||||||||||||||    
T  32827377 aattcaatatatttcactttac---atttatgatagtggagaatgcaccaatacgtaacaagtgcacttaaaactatttttttctctccttcatttatac 32827281  T
Q  152 attt 155  Q
    ||||    
T  32827280 attt 32827277  T

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Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 132
Target Start/End: Original strand, 41031605 - 41031685
Alignment:
Q  52 caattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt 132  Q
    ||||||||||||||||| ||||   |  ||||| || |||||||||||||||||||||||||  ||||||||||| |||||    
T  41031605 caattcaatatatttcactttacatttattatgatagtggaaaatgcaccaatacttaacaagtgcacttaaaactatttt 41031685  T

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Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 155
Target Start/End: Complemental strand, 39365071 - 39365010
Alignment:
Q  96 tgcaccaatacttaacaaaagcacttaaaacaa--ttttctctatccttcatttatacattt 155  Q
    |||||||||||||||||| |||||||||||| |  |||||||| ||||| ||||||||||||    
T  39365071 tgcaccaatacttaacaagagcacttaaaaccactttttctctctcctttatttatacattt 39365010  T

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Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 125
Target Start/End: Complemental strand, 54458384 - 54458313
Alignment:
Q  51 tcaattcaatatatttcaatttattatatttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa 125  Q
    ||||||||||||||| || ||||    ||||||| ||||||| |||||||| ||||||||||||| |||||||||    
T  54458384 tcaattcaatatattccactttac---atttatgataatggagaatgcacccatacttaacaaaatcacttaaaa 54458313  T

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Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 151
Target Start/End: Complemental strand, 36097695 - 36097632
Alignment:
Q  89 tggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatac 151  Q
    |||| |||||||| ||||||||||| || |||||||| || |||||||| ||||||||||||||    
T  36097695 tggagaatgcaccgatacttaacaagagtacttaaaaccatttttctctctccttcatttatac 36097632  T

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Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 8706218 - 8706280
Alignment:
Q  94 aatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    |||||| ||||||||||||| ||||||||||| || || ||||| | ||||||||||||||||    
T  8706218 aatgcatcaatacttaacaagagcacttaaaatcatttctctctcttcttcatttatacattt 8706280  T

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Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 9058105 - 9058167
Alignment:
Q  94 aatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    |||||| ||||||||||||| ||||||||||| || || ||||| | ||||||||||||||||    
T  9058105 aatgcatcaatacttaacaagagcacttaaaatcatttctctctcttcttcatttatacattt 9058167  T

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Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 54783035 - 54783097
Alignment:
Q  94 aatgcaccaatacttaacaaaagcacttaaaac-aattttctctatccttcatttatacattt 155  Q
    ||||||||||||||||| ||  ||||||||||| | |||||||| || |||||||||||||||    
T  54783035 aatgcaccaatacttaagaagtgcacttaaaactatttttctctctcattcatttatacattt 54783097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 155
Target Start/End: Complemental strand, 55415474 - 55415412
Alignment:
Q  94 aatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    |||||||||||||||||||||| || |||||| || |||||||| || || ||||||||||||    
T  55415474 aatgcaccaatacttaacaaaaacagttaaaaccatttttctctctcatttatttatacattt 55415412  T

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Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 155
Target Start/End: Complemental strand, 1772136 - 1772079
Alignment:
Q  99 accaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    ||||||||||||||| | ||||||||| || |||||||| ||||| ||||||||||||    
T  1772136 accaatacttaacaagaacacttaaaaccatttttctctctcctttatttatacattt 1772079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 196
Target Start/End: Complemental strand, 14756165 - 14756041
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaacaatttt-ctctatccttcatttatacattt-----aataaatgtgaaatga 171  Q
    ||||||| || |||| |||| |||| |||||||||| |||||||||||  ||||| |||| ||||| | ||||||||||     ||||  ||| ||||||    
T  14756165 atttatgatagtggagaatgtaccagtacttaacaagagcacttaaaattatttttctctctcctttaattatacatttttcttaatatgtgtaaaatga 14756066  T
Q  172 gcaaatgactaagtgaatttaggac 196  Q
    |||||||||| ||| ||| ||||||    
T  14756065 gcaaatgactcagttaatctaggac 14756041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 155
Target Start/End: Original strand, 49006267 - 49006331
Alignment:
Q  92 aaaatgcaccaatacttaacaaaagcacttaaaacaattttc-tctatccttcatttatacattt 155  Q
    |||||| | ||||||||||| ||| |||||||||| |||||| | | ||||||||||||||||||    
T  49006267 aaaatggatcaatacttaactaaaacacttaaaactattttcatatctccttcatttatacattt 49006331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 153
Target Start/End: Complemental strand, 54845539 - 54845491
Alignment:
Q  106 cttaacaaaagcacttaaaacaatttt-ctctatccttcatttatacat 153  Q
    |||||||||| |||||||||| ||||| |||| ||||||||||||||||    
T  54845539 cttaacaaaaacacttaaaactatttttctctctccttcatttatacat 54845491  T

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Target: scaffold0034 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 155
Target Start/End: Original strand, 98892 - 98959
Alignment:
Q  89 tggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatacattt 155  Q
    |||| |||||||||||||||| ||| ||||||||||| || |||||||| || |||||||||||||||    
T  98892 tggataatgcaccaatacttatcaagagcacttaaaatcatttttctctctcattcatttatacattt 98959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 151
Target Start/End: Complemental strand, 9603 - 9529
Alignment:
Q  78 atttatgctaatggaaaatgcaccaatacttaacaaaagcacttaaaa-caattttctctatccttcatttatac 151  Q
    ||||||| ||||||| ||| ||  |||||||||||| ||||||||||| || |||||||| ||||||||||||||    
T  9603 atttatgataatggagaatacattaatacttaacaagagcacttaaaaccatttttctctctccttcatttatac 9529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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