View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1368_high_9 (Length: 457)
Name: NF1368_high_9
Description: NF1368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1368_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 28 - 448
Target Start/End: Original strand, 39291461 - 39291877
Alignment:
| Q |
28 |
caccagttacacacaaatgttttcgagcaagttaggctcatcttccttaaagaccaaaaagaaatgattttgttgtcggagctcgaaagtcgttatttca |
127 |
Q |
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| T |
39291461 |
caccagttacacacaaatgttttcgagtgagttaggctcatcttccttaaagaccaaaaagaaatgattttgttgtcggagctcgaaagtcgttatttca |
39291560 |
T |
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| Q |
128 |
aatatcaatgtcaagaagttcaaagacataatccagggacattcaaaactttgagctacataacttcttaaaacttccatatccaagtgtgtcaaagacg |
227 |
Q |
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| T |
39291561 |
aataccaatgtcaagaagttcaaagacataatccaggg-------------------acataacttcttaaaacttccatatccaagtgtgtcaaagacg |
39291641 |
T |
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| Q |
228 |
tctttttagtaagcagtcgatggttccttaacattcaaaattcaaagtac-------aaacttgcagaagagactccaaaggaagttcgaatacattgac |
320 |
Q |
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| T |
39291642 |
tctttttagtaagcagtcgatggttccttaacattcaaaattcaaagtacacgaagaaaacttgcagaagagactccaaaggaagttagaatacattgac |
39291741 |
T |
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| Q |
321 |
acccgtgcattgtatgagttagtagtttcttagtcttttctataaatagtagagtcaaactccatacaaagaagttc-----atttatgttccaaaaact |
415 |
Q |
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| T |
39291742 |
acccgtgcattgtatgagttagtagtttcttagttttttctataaatagtagagtcaaactccatacaaaaaagttcatttaatttatgttccaaaaact |
39291841 |
T |
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| Q |
416 |
tgc---ctaaataacatatccgcctcacagaataat |
448 |
Q |
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| T |
39291842 |
tgcctactaaataacatatctgcctcacagaataat |
39291877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 356 - 417
Target Start/End: Original strand, 29456757 - 29456818
Alignment:
| Q |
356 |
ttttctataaatagtagagtcaaactccatacaaagaagttcatttatgttccaaaaacttg |
417 |
Q |
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| T |
29456757 |
ttttctataaatagtagaatcaaacttcatgcaaaggagtttattttcgttccaaaaacttg |
29456818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 355 - 419
Target Start/End: Original strand, 40945507 - 40945572
Alignment:
| Q |
355 |
cttttctataaatagtagagtcaaactccatacaaagaagttcatttatgttcca-aaaacttgcc |
419 |
Q |
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| T |
40945507 |
cttttttatgaatagtagaatcaaacttcatgcaaaggagttcatttatgttccacaaaacttgcc |
40945572 |
T |
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