View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1368_low_10 (Length: 453)
Name: NF1368_low_10
Description: NF1368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1368_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 662830 - 662764
Alignment:
| Q |
71 |
cacacgtacgttatttaggaaattgattatgcatgatattttaattaaaaatatttgattgtttaatc |
138 |
Q |
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| T |
662830 |
cacacgtacgttatttaggaaattgattatgcatgatattttaatt-aaaatatttgattgtttaatc |
662764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 276
Target Start/End: Complemental strand, 662666 - 662631
Alignment:
| Q |
241 |
ctaccaaccaagtaaaagtaaaatgatataaatggt |
276 |
Q |
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| T |
662666 |
ctaccaaccaagtaaaagtaaaatgatataaatggt |
662631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 662891 - 662855
Alignment:
| Q |
6 |
agtttcatggagcaagaacttctctcttatgttccag |
42 |
Q |
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| T |
662891 |
agtttcatggagcaagaagttctctcttatgttccag |
662855 |
T |
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Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 357 - 427
Target Start/End: Original strand, 35680829 - 35680899
Alignment:
| Q |
357 |
tgcaagcacaagcctcttcacgtttgcttggaaatcgtttccctccttttgcaccttgaaggcattataat |
427 |
Q |
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| T |
35680829 |
tgcaagcacaagtctcttcacgtttgcttggaaatcctttggctccttttgcaccttgaaggcatcataat |
35680899 |
T |
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