View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1368_low_11 (Length: 444)

Name: NF1368_low_11
Description: NF1368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1368_low_11
NF1368_low_11
[»] scaffold0048 (1 HSPs)
scaffold0048 (30-368)||(70146-70477)


Alignment Details
Target: scaffold0048 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 30 - 368
Target Start/End: Original strand, 70146 - 70477
Alignment:
Q  30 tgtagttgattttcttgtaggtttacctaaaacctcaaagtagtatggagttatttggctcattttagatactaatcattttaatcaaatgaacatcacg 129  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  70146 tgtagttgattttcttgtaggtttacctagaacctcaaagtagtatggagttatttgggtcattttagatactaatcattttaatcaaataaacatcacg 70245  T
Q  130 tattccatggatttgtcaaccaaatagttcataaataagattgtgacgctgcatgaaattatgttattagaatttcataaagtgacccatgatacaccnn 229  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||| ||||||       |||||||||||||||||||||| ||||| |||||||||      
T  70246 tattccatggacttgtcaaccaaatagtacataaataagattgtgaagctgca-------atgttattagaatttcataaagagacccttgatacacctt 70338  T
Q  230 nnnnnnnnnnnnnnnnnnncatggatatttggttacaaagcttaggataaattcatcctataatccacaatcatgtggtcaaactaagtgaccatgtcaa 329  Q
                       |||||||||||| ||| ||| |||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  70339 tttgtttttggaaaattttcatggatatttgattagaaatcttaggatgaattcatcctataatccacaatcatgtggtcaaactaaatgaacatgtcaa 70438  T
Q  330 tctttaatggacatgttgagagattttgttttatatctg 368  Q
    ||||||||||||| ||||||||||||||| |||||||||    
T  70439 tctttaatggacacgttgagagattttgtgttatatctg 70477  T

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