View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1368_low_12 (Length: 438)
Name: NF1368_low_12
Description: NF1368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1368_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 29 - 427
Target Start/End: Original strand, 13261360 - 13261758
Alignment:
| Q |
29 |
agcacttgcctatatcaaggtgtacaagataacaagtaaatgtgtcgaagaaatgtacaacaaaataaaggcgtagggggattaagacattctacttgca |
128 |
Q |
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| T |
13261360 |
agcacttgcctatatcaaggtctacaagataacaaataaatgtgtcgaagaactgtacaacaaaataaaggattagggggattaagacattctacttgca |
13261459 |
T |
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| Q |
129 |
gaaagattagaaaaccaaaagtttttatcagacgaaattgtagattacaaaatttcagtatagttcgaaaaacttttctatacctgaatcaaccttgtga |
228 |
Q |
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| T |
13261460 |
gaaagattagaaaaccaaaagtttttatcagacaaaattgtagattacaaaatttcagtataattcgaaaaacttttctatacctgaatcaaccttgtga |
13261559 |
T |
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| Q |
229 |
tcggacttgacttcacttagtggagtagttaaaatttgatcaggttcctcatctagtttttctgcttcatctccaacattttcagtttcactcgtatctt |
328 |
Q |
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| T |
13261560 |
tcggacttgacttcacttagtggagtagttaaaatttgatcgggttcctcatctagtttttctgcttcatctccaacattttcagtttcactcgtatctt |
13261659 |
T |
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| Q |
329 |
catcaatatcagtctgttcacgcaacatcccatgctctacatccaccatatttgcatcttcacttgatgatgcaaaatgcaattcttgattgtcttcat |
427 |
Q |
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| T |
13261660 |
catcaacatcaatctgttcacgcaacatctcatgctctacatccaccatatttgcatcttcacttgatgatgcaaaatgcaattcttgattgtcttcat |
13261758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 207 - 285
Target Start/End: Original strand, 13270359 - 13270437
Alignment:
| Q |
207 |
tatacctgaatcaaccttgtgatcggacttgacttcacttagtggagtagttaaaatttgatcaggttcctcatctagt |
285 |
Q |
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| T |
13270359 |
tatacctgaatcaaccttgtgatcagacttgacttcacttggtggagtagttagaaattgatgtggttcctcgtctagt |
13270437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 13262523 - 13262566
Alignment:
| Q |
204 |
ttctatacctgaatcaaccttgtgatcggacttgacttcactta |
247 |
Q |
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| T |
13262523 |
ttctatacctgaatcaacattgtgatcagacttgacctcactta |
13262566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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