View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1368_low_13 (Length: 437)
Name: NF1368_low_13
Description: NF1368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1368_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 230 - 429
Target Start/End: Original strand, 14928526 - 14928725
Alignment:
| Q |
230 |
gattaataaatagcaattacatttcttagctatgaactgtagttatctgaaatcttgattgtcttcaagaagttatattgcaagttagtgtatgaacatg |
329 |
Q |
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| T |
14928526 |
gattaataaatagcaattacatttcttagctatgaactgtagttatctgaaatcttgattgtcttcaagaagttatattgcaagttagtgtatgaacatg |
14928625 |
T |
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| Q |
330 |
gcaactaactgcaaatgttatttctgataaagtactatattgtgcaaaaagcagatgaaagtagttaaatgttattttggttaggtaacggatattattg |
429 |
Q |
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| T |
14928626 |
gcaactaacggcaaatgttatttctgataaagtaccatattgtgcaaaaagcagatgaaagtagttaaatgttattttggttaggtaacggatattattg |
14928725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 30 - 192
Target Start/End: Original strand, 14928328 - 14928490
Alignment:
| Q |
30 |
ttaacacgtggaatggaaaaccctcttgaaaggtgcatgttgaagaacttaactgttcctaatcatttgttgactgctaacagtaggctgacacatcttt |
129 |
Q |
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| T |
14928328 |
ttaacacgtggaatggaaaaccctcttgaaaggtgcatgttgaagaacttaactgttcctaatcatttgttgactgctaacagtaggctgacacatcttt |
14928427 |
T |
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| Q |
130 |
cttctttttgcatgcatttcctgatccagaattaaatttttcaaggtactgaattcacttata |
192 |
Q |
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| T |
14928428 |
cttctttttgcatgcatttcctgatccagaattaaatttttcaaggtactaaattcacttata |
14928490 |
T |
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