View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1368_low_15 (Length: 424)
Name: NF1368_low_15
Description: NF1368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1368_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 134; Significance: 1e-69; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 6 - 249
Target Start/End: Original strand, 3020458 - 3020703
Alignment:
| Q |
6 |
agaaaattcgagacacaacacaaagcaaataaacaaaaatagtttattgaaggnnnnnnnnntt-gagttctcgaaatatatccctaccttggaagaaaa |
104 |
Q |
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| T |
3020458 |
agaaaattctagacgcaagacaaagcaaataaacaaaaatagtctgttgaaggaaaaaaaaatttgagttctcgaaatatatccctgccttggaagaaaa |
3020557 |
T |
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| Q |
105 |
tttgttgaagnnnnnnngttgatgttgtgagactccaacacaaattcatcaccccctgttgacatctatcacagacctaaattttgaaggttgat-aaaa |
203 |
Q |
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| T |
3020558 |
tttgttgaagaaaaaaagttgatgttatgagactccagcacaaattcatcaccccctattgacatctatcactgacctaaattttgcaggttgataaaaa |
3020657 |
T |
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| Q |
204 |
aataatgtagtagttaccaaagtttatgagatacgaataacattgg |
249 |
Q |
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| T |
3020658 |
aataatgtagtcgttaccaaagtttatgagatacgaataacattgg |
3020703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 278 - 413
Target Start/End: Original strand, 3020732 - 3020867
Alignment:
| Q |
278 |
ccatgggataatgggaaatgaatgatttctagatctgattgttacatcaatattggtatacactgagatcttgttnnnnnnngtattacacaacaatatt |
377 |
Q |
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| T |
3020732 |
ccatgggataatgggaaatgaatgatttctagatctgattgttacatcaatattggtatgcactgagatcttgctaaaaaaagtattagacaacaatatt |
3020831 |
T |
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| Q |
378 |
gctttttaacaggccatcgttttaaggacttttcat |
413 |
Q |
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| T |
3020832 |
gctttttaacaggccatcgttttaaggacttttcat |
3020867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 98 - 236
Target Start/End: Original strand, 3022220 - 3022358
Alignment:
| Q |
98 |
aagaaaatttgttgaagnnnnnnngttgatgttgtgagactccaacacaaattcatcaccccctgttgacatctatcacagacctaaattttgaaggttg |
197 |
Q |
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||||||||||||||||| ||||||||| |||||||||| |||||| |||||||||||| |||| ||| ||||| |||||||||||||||||||| |
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| T |
3022220 |
aagaaaatttgttgaagaaaaaaagttgatgttatgagactccatcacaaactcatcaccccctcttgatatcaatcactgacctaaattttgaaggttg |
3022319 |
T |
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| Q |
198 |
ataaaaaataatgtagtagttaccaaagtttatgagata |
236 |
Q |
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| T |
3022320 |
ataaaaaataatgtagtggtcaccaatgtttatgagata |
3022358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 299 - 413
Target Start/End: Original strand, 3018705 - 3018816
Alignment:
| Q |
299 |
atgatttctagatctgattgttacatcaatattggtatacactgagatcttgttnnnnnnngtattacacaacaatattgctttttaacaggccatcgtt |
398 |
Q |
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||||||| |||||||||||| ||||||||||||||||||||||||||| | || |||||| ||||||||||||||| |||||||| || |
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| T |
3018705 |
atgattttcagatctgattgtcacatcaatattggtatacactgagatc---ataaaaaaagtgatacacagcaatattgctttttattaggccatcttt |
3018801 |
T |
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| Q |
399 |
ttaaggacttttcat |
413 |
Q |
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| T |
3018802 |
ttaaggacttttcat |
3018816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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