View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1368_low_18 (Length: 393)
Name: NF1368_low_18
Description: NF1368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1368_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 30 - 372
Target Start/End: Original strand, 47257663 - 47258014
Alignment:
| Q |
30 |
aaacaaagttcaaagattatgcagttcaagtttgatcctcggggttttgaaataaggttgtttattttgttaatttgtttt---------taattatttc |
120 |
Q |
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| T |
47257663 |
aaacaaagttcaaagattatgcagttcaagtttgatcctcagggttttgaaataaggttgtttattttgttaatttgttttatttgtttttaattatttc |
47257762 |
T |
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| Q |
121 |
aacaaactatgttaatgttggatttgtagaataggtgttaattttgtacccnnnnnnnngagaataggtgttaatttggatggatctgagaaattattag |
220 |
Q |
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| T |
47257763 |
aacaaactatgttaatgttggatttgtagaataggtgttaattttgtaccaaaaaaaaagagaataggtgttaatttggatggatctgagatattattag |
47257862 |
T |
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| Q |
221 |
aatgtaaattctgacttgtataatcattggattgtgcatgcattgcattgtggttgagatcactagattccaataatatacttctgctaagaaggagaaa |
320 |
Q |
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| T |
47257863 |
aatgtaaattctgacttgtataatcattggattgtgcatgcattgcattgtggttgagatcactagattccaataatatacttctgctaagaaggagaaa |
47257962 |
T |
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| Q |
321 |
tttcacatgatgaatgcagagtttctcagcatgtgagtcccacatgatgatg |
372 |
Q |
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| T |
47257963 |
tttcacatgatgaatgcagagtttctcagcatgtgagtcccacatgatgatg |
47258014 |
T |
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