View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1368_low_19 (Length: 392)
Name: NF1368_low_19
Description: NF1368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1368_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 27 - 379
Target Start/End: Complemental strand, 8927997 - 8927645
Alignment:
| Q |
27 |
ccaataatatataataaataaacaccaaagactacatcgcttaataatctcagcttattaacaaaaccacacataatcaagctaataatatgcannnnnn |
126 |
Q |
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| T |
8927997 |
ccaattatatataataaataaacaccaaagactaaatcgcttaataatctcagcttattaacaaaaccacacataatcaatctaataatatgcatttttt |
8927898 |
T |
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| Q |
127 |
nnnatatggttactacgggtcccacttcaacacttgacatggctttcatcatagcttcaaatctaggctctttagcttggaatttgagtcccatatagag |
226 |
Q |
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| T |
8927897 |
tttatatggttactacgggtcccacttcaacacttgacatggctttcatcatagcttcaaatctaggctctttagcttggaatttgagtcccatatagag |
8927798 |
T |
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| Q |
227 |
tttcatgtaatcatcaaagataaatcttggataaatttcacttgtttcatcttcctttaataaggttgaagctggtgagattacagcatcattccctgga |
326 |
Q |
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| T |
8927797 |
tttcatgtaatcatcaaagataaattttggataaatttcacttgtttcatcttccttcaataaggttgaagctggtgagattacagcatcattccctgga |
8927698 |
T |
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| Q |
327 |
ttgtagaatgaagctatggacattctagcaccatctgtttgagcaattactct |
379 |
Q |
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| T |
8927697 |
ttgtagaatgaagctatggacattctagcaccatctgtttgagcaattactct |
8927645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 376
Target Start/End: Complemental strand, 55528502 - 55528423
Alignment:
| Q |
297 |
gctggtgagattacagcatcattccctggattgtagaatgaagctatggacattctagcaccatctgtttgagcaattac |
376 |
Q |
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| T |
55528502 |
gctggagagatcactgcgtcattgcctggattataaaatgaagctatggacattcttttcccatctgtttgagcaattac |
55528423 |
T |
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