View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1368_low_20 (Length: 391)

Name: NF1368_low_20
Description: NF1368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1368_low_20
NF1368_low_20
[»] chr1 (6 HSPs)
chr1 (47-382)||(1463213-1463547)
chr1 (47-218)||(1496270-1496441)
chr1 (249-332)||(1482197-1482280)
chr1 (287-382)||(1496118-1496213)
chr1 (47-85)||(1480926-1480964)
chr1 (249-314)||(4154249-4154314)
[»] chr8 (2 HSPs)
chr8 (47-382)||(26790971-26791297)
chr8 (47-133)||(971412-971498)
[»] chr3 (2 HSPs)
chr3 (47-213)||(50276749-50276915)
chr3 (300-379)||(50276996-50277075)
[»] chr2 (1 HSPs)
chr2 (57-183)||(15869716-15869842)
[»] chr4 (2 HSPs)
chr4 (36-157)||(44533468-44533588)
chr4 (84-145)||(53074842-53074903)
[»] chr6 (1 HSPs)
chr6 (45-109)||(3157240-3157304)


Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 47 - 382
Target Start/End: Original strand, 1463213 - 1463547
Alignment:
Q  47 aggtaccattatgacaatatcaaaggatagagttaaaccatctccactacctgatagctggaaactaaaggaaatatttgctactggtattgtgcttggc 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1463213 aggtaccattatgacaatatcaaaggatagagttaaaccatctccactacctgatagctggaaactaaaggaaatatttgctactggtattgtgcttggc 1463312  T
Q  147 agttacatggccctaatgacagtcatatttttctgggccatgcatgattccgactttttctcggtaaattaaatttatatatgtttatannnnnnncatt 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||       ||||    
T  1463313 agttacatggccctaatgacagtcatatttttctgggccatgcatgattctgactttttctcggtaaattaaatttatatatgtttata-ttttttcatt 1463411  T
Q  247 taaatatcatcaccaactaggagaaatactaagcactataagctttaaacatgttgcaggacaagtttggtgtgaggtctttgagaaataatcctgctga 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1463412 taaatatcatcaccaactaggagaaatactaagcactataagctttaaacatgttgcaggacaagtttggtgtgaggtctttgagaaataatcctgctga 1463511  T
Q  347 gatgatggcagctctatacctgcaagtcagtataat 382  Q
    ||||||||||||||||||||||||||||||||||||    
T  1463512 gatgatggcagctctatacctgcaagtcagtataat 1463547  T

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Target: chr1; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 47 - 218
Target Start/End: Complemental strand, 1496441 - 1496270
Alignment:
Q  47 aggtaccattatgacaatatcaaaggatagagttaaaccatctccactacctgatagctggaaactaaaggaaatatttgctactggtattgtgcttggc 146  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| | ||| ||||||||||||||| |||| || ||     
T  1496441 aggtaccattatgacaatatcaaaggatagagtgaaaccatctccactacctgatagttggaaactgagggagatatttgctactggtgttgtcctagga 1496342  T
Q  147 agttacatggccctaatgacagtcatatttttctgggccatgcatgattccgactttttctcggtaaattaa 218  Q
    ||||||||||| |||||||||||  ||||||||||||| ||| | ||| || |||| || ||||||||||||    
T  1496341 agttacatggcactaatgacagtagtatttttctgggcgatgaaagataccaacttcttttcggtaaattaa 1496270  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 249 - 332
Target Start/End: Original strand, 1482197 - 1482280
Alignment:
Q  249 aatatcatcaccaactaggagaaatactaagcactataagctttaaacatgttgcaggacaagtttggtgtgaggtctttgaga 332  Q
    ||||||||||||||| || | |||| ||||||||||| | ||||||| |||||| |||||||||||||| ||||||||||||||    
T  1482197 aatatcatcaccaacaagaaaaaatgctaagcactattacctttaaatatgttgaaggacaagtttggtatgaggtctttgaga 1482280  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 287 - 382
Target Start/End: Complemental strand, 1496213 - 1496118
Alignment:
Q  287 agctttaaacatgttgcaggacaagtttggtgtgaggtctttgagaaataatcctgctgagatgatggcagctctatacctgcaagtcagtataat 382  Q
    ||||||| | ||||||||| ||||||||||||||||| || | ||| ||||||||| |||||||||||| ||| |||| || ||||| ||||||||    
T  1496213 agctttatatatgttgcagaacaagtttggtgtgaggcctataagacataatcctgatgagatgatggcggctttatatctacaagttagtataat 1496118  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 85
Target Start/End: Complemental strand, 1480964 - 1480926
Alignment:
Q  47 aggtaccattatgacaatatcaaaggatagagttaaacc 85  Q
    |||||||||||| ||||||||||||||||||||||||||    
T  1480964 aggtaccattattacaatatcaaaggatagagttaaacc 1480926  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 249 - 314
Target Start/End: Complemental strand, 4154314 - 4154249
Alignment:
Q  249 aatatcatcaccaactaggagaaatactaagcactataagctttaaacatgttgcaggacaagttt 314  Q
    ||||||||||| ||||||||||||  ||||||| ||| | ||||||| |||||| |||||||||||    
T  4154314 aatatcatcacaaactaggagaaaacctaagcattattacctttaaatatgttgaaggacaagttt 4154249  T

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Target: chr8 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 47 - 382
Target Start/End: Original strand, 26790971 - 26791297
Alignment:
Q  47 aggtaccattatgacaatatcaaaggatagagttaaaccatctccactacctgatagctggaaactaaaggaaatatttgctactggtattgtgcttggc 146  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||| ||||| |||||||||||||||||||||||||||    
T  26790971 aggtaccattatgacaatatcaaaggatagagttaaaccatctccattgcctgatagttggaaacttaaggagatatttgctactggtattgtgcttggc 26791070  T
Q  147 agttacatggccctaatgacagtcatatttttctgggccatgcatgattccgactttttctcggtaaattaaatttatatatgtttatannnnnnncatt 246  Q
    ||||||||||| |||||||||||||||||||||||||| ||| | ||| | ||||||||||||||||| | ||||||||| | | | |        | ||    
T  26791071 agttacatggcactaatgacagtcatatttttctgggcaatgaacgatactgactttttctcggtaaa-tcaatttatatttctattt-----tgtcttt 26791164  T
Q  247 taaatatcatcaccaactaggagaaatactaagcactataagctttaaacatgttgcaggacaagtttggtgtgaggtctttgagaaataatcctgctga 346  Q
    ||| |||||||| |||||||||||||| ||||| |  ||  |||||||| |    |||||||| |||||||||||||||||||||| ||| ||||| |||    
T  26791165 taagtatcatcatcaactaggagaaatcctaagtatcatttgctttaaata---cgcaggacacgtttggtgtgaggtctttgagagatagtcctgatga 26791261  T
Q  347 gatgatggcagctctatacctgcaagtcagtataat 382  Q
    ||||||||||||| | ||||| ||||||||||||||    
T  26791262 gatgatggcagctttgtacctacaagtcagtataat 26791297  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 133
Target Start/End: Complemental strand, 971498 - 971412
Alignment:
Q  47 aggtaccattatgacaatatcaaaggatagagttaaaccatctccactacctgatagctggaaactaaaggaaatatttgctactgg 133  Q
    ||||||||||||||||||||| || ||||| ||||| || || ||||| |||||||| ||||| || |  ||||| |||||||||||    
T  971498 aggtaccattatgacaatatccaaagatagggttaagccttcaccacttcctgatagttggaagcttagtgaaatttttgctactgg 971412  T

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Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 47 - 213
Target Start/End: Original strand, 50276749 - 50276915
Alignment:
Q  47 aggtaccattatgacaatatcaaaggatagagttaaaccatctccactacctgatagctggaaactaaaggaaatatttgctactggtattgtgcttggc 146  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||| | || || || |||||||| |  || ||||||||||||||| ||||||| ||     
T  50276749 aggtaccattatgacaatatccaaggatagagtaaaaccatctccaatgccagacagttggaaactgagagagatatttgctactggtgttgtgctaggt 50276848  T
Q  147 agttacatggccctaatgacagtcatatttttctgggccatgcatgattccgactttttctcggtaa 213  Q
    || |||||||| |||||||||||  | |||||||||  |||| | ||| |||| || ||||||||||    
T  50276849 agctacatggcactaatgacagtggtgtttttctggctcatgaaggataccgatttcttctcggtaa 50276915  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 300 - 379
Target Start/End: Original strand, 50276996 - 50277075
Alignment:
Q  300 ttgcaggacaagtttggtgtgaggtctttgagaaataatcctgctgagatgatggcagctctatacctgcaagtcagtat 379  Q
    ||||||||||||||||||||||| ||  | ||||| || |||| ||| ||||||||||| || ||||| |||||||||||    
T  50276996 ttgcaggacaagtttggtgtgagatcaatcagaaacaaccctgatgaaatgatggcagccctctacctacaagtcagtat 50277075  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 183
Target Start/End: Original strand, 15869716 - 15869842
Alignment:
Q  57 atgacaatatcaaaggatagagttaaaccatctccactacctgatagctggaaactaaaggaaatatttgctactggtattgtgcttggcagttacatgg 156  Q
    |||||||| |||||||| |||||||| ||||||||| | ||||||||||||||||| |  ||||||||||| |||||| |  |||||||  ||||| |||    
T  15869716 atgacaatttcaaaggacagagttaagccatctccaatgcctgatagctggaaactgagagaaatatttgcaactggtgtcatgcttggaggttacttgg 15869815  T
Q  157 ccctaatgacagtcatatttttctggg 183  Q
    |  | ||||| || ||||| |||||||    
T  15869816 caatgatgactgtgatattcttctggg 15869842  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 157
Target Start/End: Original strand, 44533468 - 44533588
Alignment:
Q  36 tggacatcatcaggtaccattatgacaatatcaaaggatagagttaaaccatctccactacctgatagctggaaactaaaggaaatatttgctactggta 135  Q
    |||||||||| |||||| || |||||||| || || ||||| || |||||||| || || || ||||||||||| |||  ||| |||||| |||| |||     
T  44533468 tggacatcat-aggtactatcatgacaatttccaaagatagggtaaaaccatcacctcttccagatagctggaagctatcggagatatttactaccggtg 44533566  T
Q  136 ttgtgcttggcagttacatggc 157  Q
    |||||||||| |||||| ||||    
T  44533567 ttgtgcttggtagttacttggc 44533588  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 53074903 - 53074842
Alignment:
Q  84 ccatctccactacctgatagctggaaactaaaggaaatatttgctactggtattgtgcttgg 145  Q
    ||||||||| | ||||||||||||||| | || ||||||||||||||||| ||||| |||||    
T  53074903 ccatctccattgcctgatagctggaaattgaaagaaatatttgctactggaattgttcttgg 53074842  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 3157240 - 3157304
Alignment:
Q  45 tcaggtaccattatgacaatatcaaaggatagagttaaaccatctccactacctgatagctggaa 109  Q
    |||||||| |||||||||||||| |||||||| || || |||||||||   || |||||||||||    
T  3157240 tcaggtactattatgacaatatccaaggatagggtaaagccatctccatatccagatagctggaa 3157304  T

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