View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1368_low_25 (Length: 369)
Name: NF1368_low_25
Description: NF1368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1368_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 93 - 359
Target Start/End: Complemental strand, 11040356 - 11040093
Alignment:
| Q |
93 |
gatactaacgattagattaatctaatgattgagattctgccaaagagcttgaagaagttgtagaacatccaagtgaaactattttgtatagcttctatat |
192 |
Q |
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| T |
11040356 |
gatactaatgattagattaatctaatgattgagattctgccaaagagcttgaagaagttgtagaacatccaagtgaaactattttgtatagcttctatat |
11040257 |
T |
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| Q |
193 |
taaaaatccgtaagcttgattcaatcgaaaagatctactacgagtatagtttaattagccttttcaagtttgaagattacatttattattgaattgaaca |
292 |
Q |
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| T |
11040256 |
taaaaatccgtaagcttgattcaatagaaaagat---ctacgagtatagtttaattagccttttcaagtttgaagattgcatttattattgaattgaaca |
11040160 |
T |
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| Q |
293 |
aagagtagagttacctttcttgtttttgggggaacaacctagttccttgttgtcactgttactagta |
359 |
Q |
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| T |
11040159 |
aagaatagagttacctttcttgttttttgggacacaatctacttccttgttgtcactgttactagta |
11040093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 2070079 - 2070025
Alignment:
| Q |
9 |
caaacaagggaataattgaatttgattctctgttaactgtcaaagttttctctaa |
63 |
Q |
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| T |
2070079 |
caaacaagggaataattgaatttgattctctgttaactgtcaaagttttctctaa |
2070025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 2074425 - 2074371
Alignment:
| Q |
9 |
caaacaagggaataattgaatttgattctctgttaactgtcaaagttttctctaa |
63 |
Q |
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| T |
2074425 |
caaataagggaataattgaatttgattctctgttaactgtcaaagttttctctaa |
2074371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 276 - 344
Target Start/End: Complemental strand, 11025126 - 11025058
Alignment:
| Q |
276 |
tattattgaattgaacaaagagtagagttacctttcttgtttttgggggaacaacctagttccttgttg |
344 |
Q |
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| T |
11025126 |
tattattgaattgaacgaagaatagagttacctttcttctttttggggaaacaatctacttccttgttg |
11025058 |
T |
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