View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1368_low_26 (Length: 352)
Name: NF1368_low_26
Description: NF1368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1368_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 30 - 288
Target Start/End: Original strand, 11369046 - 11369305
Alignment:
| Q |
30 |
gtattcacatgttctttttcagtctgccactctttctaaccactagataacaaaattagatagtcgtattcacatgttcttgagctatctatcttatttg |
129 |
Q |
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| T |
11369046 |
gtattcacatgttctttttcagtctgccactctttctaaccactagataacaaaattagatagtcgtattcacatgttcttgagctatctatcttatttg |
11369145 |
T |
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| Q |
130 |
atgaatgattgacttactaggcaggcattatatcactggatataataagtttgacttagttattttggattatttaattaatcatgtttgatatcatttt |
229 |
Q |
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| T |
11369146 |
atgaatgattgacttactaggcaggcattatatcactggatataataagtttgacttagttattttggattatttaattaatcatgtttgatatcatttt |
11369245 |
T |
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| Q |
230 |
gtctt-aaaaatgttattctttaaacctacctttagggtatttttttggccgcctaagaa |
288 |
Q |
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| T |
11369246 |
gtcttcaaaaatgttattctttaaacctacctttagggtatttttttggccgcctaagaa |
11369305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 11368997 - 11369061
Alignment:
| Q |
46 |
tttcagtctgccactctttctaaccactagataacaaaattagatagtcgtattcacatgttctt |
110 |
Q |
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| T |
11368997 |
tttcagtctgccactctttttaaccactggataacaaaattagatagtcgtattcacatgttctt |
11369061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 340
Target Start/End: Original strand, 11369323 - 11369355
Alignment:
| Q |
308 |
tttgcaggagttgtttacattgatttgaagaat |
340 |
Q |
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| T |
11369323 |
tttgcaggagttgtttacattgatttgaagaat |
11369355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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