View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1368_low_28 (Length: 346)
Name: NF1368_low_28
Description: NF1368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1368_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 5373864 - 5374181
Alignment:
| Q |
1 |
tttttgattcttgaggaattcgtgagaaatttctctcgttatatagcattgctgtattttgtttgtttataaaaagagaaattcatggttagttttcctt |
100 |
Q |
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| T |
5373864 |
tttttgattcttgaggaattcgtgagaaatttctcgcgttatatagcattgctgtattttgtttgtttataaaaagagaaattcatggttagttttcctt |
5373963 |
T |
|
| Q |
101 |
ccgtgacaattacctaaaaccctaatcatcatcatcttgccacaccctcataaacactttttattttgtccattatttgcgtttccaatcactttgtttc |
200 |
Q |
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| T |
5373964 |
ccgtgacaattacctaaaaccctaatcatcatcatcttgccacaccctcagaaacactttttattttgtccattatttgcgtttccaatcactttgtttc |
5374063 |
T |
|
| Q |
201 |
ttcccgtaacaatgattcttccattcgaacccaaaatacagagaataacagcaaaccctaacacgaatatggaaaacaaggaagaagacagactctctga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5374064 |
ttcccgtaacaatgattcttccattcgaacccaaaatacagagaataacagcaaaccctaacacgaatatggaaaacaaggaagaagacagactctctga |
5374163 |
T |
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| Q |
301 |
tttaccagattccattct |
318 |
Q |
| |
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|||||||||||||||||| |
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| T |
5374164 |
tttaccagattccattct |
5374181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 208 - 318
Target Start/End: Original strand, 5367517 - 5367627
Alignment:
| Q |
208 |
aacaatgattcttccattcgaacccaaaatacagagaataacagcaaaccctaacacgaatatggaaaacaaggaagaagacagactctctgatttacca |
307 |
Q |
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|||||||||| ||||| |||||||||||| | ||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5367517 |
aacaatgatttttccactcgaacccaaaacaaagagaataacaacaaaccccaacacgaatattgaaaacaaggaagaagacagactctctgatttacca |
5367616 |
T |
|
| Q |
308 |
gattccattct |
318 |
Q |
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||||| ||||| |
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| T |
5367617 |
gattcgattct |
5367627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 172 - 318
Target Start/End: Original strand, 5355837 - 5355979
Alignment:
| Q |
172 |
attatttgcgtttccaatcactttgtttcttcccgtaacaatgattcttccattcgaacccaaaatacagagaataacagcaaaccctaacacgaatatg |
271 |
Q |
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|||||||| |||||| |||||||| |||| || |||||||||||| ||||| |||||||||| | | ||||||||||| |||||||||||| |||||| |
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| T |
5355837 |
attatttgtgtttcccttcactttgcttct-cctgtaacaatgatttttccactcgaacccaatacagagagaataacaacaaaccctaacaggaatatt |
5355935 |
T |
|
| Q |
272 |
gaaaacaaggaagaagacagactctctgatttaccagattccattct |
318 |
Q |
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||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
5355936 |
gaaaaca---atgaagacagactctctgatttaccagattccattct |
5355979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 213 - 318
Target Start/End: Original strand, 5362309 - 5362411
Alignment:
| Q |
213 |
tgattcttccattcgaacccaaaatacagagaataacagcaaaccctaacacgaatatggaaaacaaggaagaagacagactctctgatttaccagattc |
312 |
Q |
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||||||||| | ||||||||||| | ||||||| ||| |||||||||||| |||||| ||||||||| ||||| |||||| |||||||||||||||| |
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| T |
5362309 |
tgattcttctgtccgaacccaaaacaaagagaattacaacaaaccctaacatgaatattgaaaacaag---gaagatagactcactgatttaccagattc |
5362405 |
T |
|
| Q |
313 |
cattct |
318 |
Q |
| |
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|||||| |
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| T |
5362406 |
cattct |
5362411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 10310773 - 10310827
Alignment:
| Q |
1 |
tttttgattcttgaggaattcgtgagaaatttctctcgttatatagcattgctgt |
55 |
Q |
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|||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
10310773 |
tttttgattcttgaggaattcgtgagaaatctctcgcgttatatagcattgctgt |
10310827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 30718114 - 30718168
Alignment:
| Q |
1 |
tttttgattcttgaggaattcgtgagaaatttctctcgttatatagcattgctgt |
55 |
Q |
| |
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||||| |||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
30718114 |
ttttttattcttgaggaattcgtgagaaatctctcgcgttatatagcattgctgt |
30718168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 40271058 - 40271112
Alignment:
| Q |
1 |
tttttgattcttgaggaattcgtgagaaatttctctcgttatatagcattgctgt |
55 |
Q |
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|||||||||||||||||||||||||||||| | || ||||||||||||||||||| |
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| T |
40271058 |
tttttgattcttgaggaattcgtgagaaatctttcgcgttatatagcattgctgt |
40271112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 27456035 - 27456084
Alignment:
| Q |
1 |
tttttgattcttgaggaattcgtgagaaatttctctcgttatatagcatt |
50 |
Q |
| |
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||||| |||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
27456035 |
ttttttattcttgaggaattcgtgagaaatctctcgcgttatatagcatt |
27456084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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