View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1368_low_3 (Length: 532)
Name: NF1368_low_3
Description: NF1368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1368_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-144; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 72 - 354
Target Start/End: Complemental strand, 4592812 - 4592527
Alignment:
| Q |
72 |
atgtttagttatgtaatcttttcattgtattagggattatcaagctttctgatttgcatctttcgttccatttttagcggtatcatagttttaaattatg |
171 |
Q |
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| T |
4592812 |
atgtttagttatgtaatcttttcattgtattagggattatcaagctttctgatttgcatctttcgttccatttttagcggtatcatagttttaaattatg |
4592713 |
T |
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| Q |
172 |
gattctgttatactatgaaccttctttatattgcggaaaaatgtggctgatgcaattgaa---ataactgctgtgatgctgttataaagatctcaaattc |
268 |
Q |
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| T |
4592712 |
gattctgttatactatgaaccttctttatattgcggaaaaatgtggctgatgcaattgaaataataactgctgtgatgccgttacaaagatctcaaattc |
4592613 |
T |
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| Q |
269 |
gatttaaaaccatacaattggtatatagcactttggtaggaaactagtttaatattaaaacacatcaacttggtctgctacatctg |
354 |
Q |
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| T |
4592612 |
gatttaaaaccatacaattggtatatagcactttggtaggaaactagtttaatataaaaacacatcaacttggtctgctacatctg |
4592527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 357 - 528
Target Start/End: Complemental strand, 4592395 - 4592224
Alignment:
| Q |
357 |
cgtccgatctttgacctatggccgagactaccacagtaggaaatgctgacagcaaatcatgacagggcatgttaatttttgttatcgatttatgattgca |
456 |
Q |
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| T |
4592395 |
cgtccgatctttgacatatggccgagactaccacagtaggaaatgctgacagcaaatcatgacagggcatgttaatttttgttatcgatttatgattgca |
4592296 |
T |
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| Q |
457 |
ttgctttagcataattggtctctagagtaaaacattggtctagattaatctcattctacatattcttcgaca |
528 |
Q |
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| T |
4592295 |
ttgctttagcataattggtctctagagtaaaacattggtctagattaatctcattctacatattctttgaca |
4592224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 373 - 423
Target Start/End: Complemental strand, 4584575 - 4584525
Alignment:
| Q |
373 |
tatggccgagactaccacagtaggaaatgctgacagcaaatcatgacaggg |
423 |
Q |
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| T |
4584575 |
tatggccgagattacaacagtaggaaatgctgactgcaaatcatgacaggg |
4584525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 448 - 528
Target Start/End: Complemental strand, 4600740 - 4600658
Alignment:
| Q |
448 |
atgattgcatt-gctttagcataattggtctctagagtaaaacattggtctaga-ttaatctcattctacatattcttcgaca |
528 |
Q |
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| T |
4600740 |
atgattgcatttgttttagcataattggtctcttgtgtaaaacattagtttacatttcatctcattctacatattctttgaca |
4600658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 483 - 528
Target Start/End: Complemental strand, 4584525 - 4584480
Alignment:
| Q |
483 |
gtaaaacattggtctagattaatctcattctacatattcttcgaca |
528 |
Q |
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| T |
4584525 |
gtaaaatatttgtctagattaatctcattctacatattctttgaca |
4584480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 488 - 528
Target Start/End: Complemental strand, 4573293 - 4573253
Alignment:
| Q |
488 |
acattggtctagattaatctcattctacatattcttcgaca |
528 |
Q |
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| T |
4573293 |
acattggtctagattaatctcatcctacatattctttgaca |
4573253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 157
Target Start/End: Complemental strand, 4585028 - 4584970
Alignment:
| Q |
98 |
gtattagggattatcaagctttctgatttgcatctttcgttccatttttagcggtatcat |
157 |
Q |
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| T |
4585028 |
gtattagggattatcaagctttcagattttcat-tttagttccatttttactggtatcat |
4584970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 354
Target Start/End: Complemental strand, 4584787 - 4584743
Alignment:
| Q |
310 |
aactagtttaatattaaaacacatcaacttggtctgctacatctg |
354 |
Q |
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| T |
4584787 |
aactagtttaatacgaaaacgcatcaacttcgtctgctacatctg |
4584743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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