View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1368_low_34 (Length: 330)
Name: NF1368_low_34
Description: NF1368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1368_low_34 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 162; Significance: 2e-86; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 7833340 - 7833517
Alignment:
| Q |
1 |
ccaacctaattcactcaatataaatgcatgcactattatgtcctttggtgcttcactcttctttttcgaaactcaattcaatcttttcaaactgttccgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7833340 |
ccaacctaattcactcaatataaatgcatgcactattatttcctttggttcttcactcttcttttttgaaactcaattcaatcttttcaaactgttccgt |
7833439 |
T |
|
| Q |
101 |
ggctggccgaaataatgtggaaaccatcctgacctatgcatgtcatttaattttgagaggcccttatactctttatac |
178 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7833440 |
ggctggccgaaataatgtggaaaccattctgacctatgcatgtcatttaattttgagaggcccttatactctttatac |
7833517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 7783877 - 7784054
Alignment:
| Q |
1 |
ccaacctaattcactcaatataaatgcatgcactattatgtcctttggtgcttcactcttctttttcgaaactcaattcaatcttttcaaactgttccgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
|
|
| T |
7783877 |
ccaacctaattcactcaatataaatgcatacactattatgtcctttggtgcttcactcttcttttttgaaactcaattcaatcttttcaaactgttcagt |
7783976 |
T |
|
| Q |
101 |
ggctggccgaaataatgtggaaaccatcctgacctatgcatgtcatttaattttgagaggcccttatactctttatac |
178 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7783977 |
ggctggccgaaataatgtggaaaccattctgacctatgcatgtcatttaattttaagaggcccttatactctttatac |
7784054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 7803945 - 7804122
Alignment:
| Q |
1 |
ccaacctaattcactcaatataaatgcatgcactattatgtcctttggtgcttcactcttctttttcgaaactcaattcaatcttttcaaactgttccgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7803945 |
ccaacctaattcactcaatataaatgcatgcgctatgatgtcctttggtgcttcactcttcttttttgaaactcaattcaatcttttcaaactgttccgt |
7804044 |
T |
|
| Q |
101 |
ggctggccgaaataatgtggaaaccatcctgacctatgcatgtcatttaattttgagaggcccttatactctttatac |
178 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7804045 |
ggctggccgaaataatgtggaaaccattctgatctatgcatgtcatttaattttgagaggcccttatactctttatac |
7804122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 17295043 - 17294920
Alignment:
| Q |
1 |
ccaacctaattcactcaatataaatgcatgcactattatgtcctttggtgcttcactcttctttttcgaaactcaattcaatcttttcaaactgttccgt |
100 |
Q |
| |
|
|||||||||||||||| || |||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||| || | |
|
|
| T |
17295043 |
ccaacctaattcactcgatgtaaagacatgcactattacctcctttggtgcttcactcttctttttttaaactcaattcaatctgttcaaactgtaccat |
17294944 |
T |
|
| Q |
101 |
ggctggccgaaataatgtggaaac |
124 |
Q |
| |
|
||||||||| |||||||||||||| |
|
|
| T |
17294943 |
ggctggccgtaataatgtggaaac |
17294920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 240 - 318
Target Start/End: Original strand, 7784117 - 7784195
Alignment:
| Q |
240 |
ggtagctccgttggtttccaaccctgtttctgacctgaaaaaagctatgaataagttgaagatgaagtacatatatatt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
7784117 |
ggtagctccgttggtttccaaccctgtttctgacctgaaaaaagctatgaataagttgaagatgaagtacctgtatatt |
7784195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 240 - 318
Target Start/End: Original strand, 7804184 - 7804262
Alignment:
| Q |
240 |
ggtagctccgttggtttccaaccctgtttctgacctgaaaaaagctatgaataagttgaagatgaagtacatatatatt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
7804184 |
ggtagctccgttggtttccaaccctgtttctgacctgaaaaaagctatgaataagttgaagatgaagtacctgtatatt |
7804262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 240 - 318
Target Start/End: Original strand, 7833579 - 7833657
Alignment:
| Q |
240 |
ggtagctccgttggtttccaaccctgtttctgacctgaaaaaagctatgaataagttgaagatgaagtacatatatatt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
7833579 |
ggtagctccgttggtttccaaccctgtttctgacctggaaaaagctatgaataagttgaagatgaagtacctgtatatt |
7833657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University