View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1368_low_38 (Length: 314)

Name: NF1368_low_38
Description: NF1368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1368_low_38
NF1368_low_38
[»] chr1 (2 HSPs)
chr1 (204-314)||(4238357-4238467)
chr1 (28-127)||(4238185-4238284)


Alignment Details
Target: chr1 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 204 - 314
Target Start/End: Original strand, 4238357 - 4238467
Alignment:
Q  204 gtatgaacctctcactgtgaaattcccacatgagaaaatccaaatccaccgtcttatatttaagatcagtaagtaacaccagaagatatatccaccagaa 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4238357 gtatgaacctctcactgtgaaattcccacatgagaaaatccaaatccaccgtcttatatttaagatcagtaagtaacaccagaagatatatccaccagaa 4238456  T
Q  304 gtcgtgccgcc 314  Q
    |||||||||||    
T  4238457 gtcgtgccgcc 4238467  T

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Target: chr1; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 28 - 127
Target Start/End: Original strand, 4238185 - 4238284
Alignment:
Q  28 caaaacttttctttaattcaccatagtaaatgcaggagtaatgcaacacaaaccttattttggttgtgctgcatgtaaatctgcttgatttcacaactaa 127  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  4238185 caaaacttttctttaattcaccatagtaaatgcaggtgtaatgcaaaacaaaccttattttggttgtgctgtatttaaatctgcttgatttcacaactaa 4238284  T

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