View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1368_low_45 (Length: 298)
Name: NF1368_low_45
Description: NF1368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1368_low_45 |
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Alignment Details
Target: chr8 (Bit Score: 126; Significance: 5e-65; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 33 - 232
Target Start/End: Complemental strand, 7803991 - 7803796
Alignment:
| Q |
33 |
caaaggacataatagtgcatgcatttatattgagtgaattaggttggatgaatgtgccaataggcatgggaaatagagtatgaatcagagttgatggctg |
132 |
Q |
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| T |
7803991 |
caaaggacatcatagcgcatgcatttatattgagtgaattaggttggatgaatgtgccaataggcatgggaaatagagtatgaataagagttgatggttg |
7803892 |
T |
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| Q |
133 |
ttctggttttctataaggaagtcaaaaggcccttattaattaatgttgtannnnnnnaagcttggaaaacgcatgcttggaacactaaagggttacaaac |
232 |
Q |
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| T |
7803891 |
ttctggttttctagatggaagtcaaaaggccctt----actaatgttgtatttttttatgcttggaaaacgcatgcatggaacactaaagggttacaaac |
7803796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 33 - 232
Target Start/End: Complemental strand, 7833386 - 7833194
Alignment:
| Q |
33 |
caaaggacataatagtgcatgcatttatattgagtgaattaggttggatgaatgtgccaataggcatgggaaatagagtatgaatcagagttgatggctg |
132 |
Q |
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| T |
7833386 |
caaaggaaataatagtgcatgcatttatattgagtgaattaggttggatgaatgcgccaataggcatgggaaatagagtatgaatcagagttgatg---g |
7833290 |
T |
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| Q |
133 |
ttctggttttctataaggaagtcaaaaggcccttattaattaatgttgtannnnnnnaagcttggaaaacgcatgcttggaacactaaagggttacaaac |
232 |
Q |
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| T |
7833289 |
ttctggttttctagatggaagtcaaaaggccatt----attaatgttgtatttttttaagcttggaaaacgcatgcgtggaacagtaaagggttacaaac |
7833194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 33 - 154
Target Start/End: Complemental strand, 7783923 - 7783802
Alignment:
| Q |
33 |
caaaggacataatagtgcatgcatttatattgagtgaattaggttggatgaatgtgccaataggcatgggaaatagagtatgaatcagagttgatggctg |
132 |
Q |
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| T |
7783923 |
caaaggacataatagtgtatgcatttatattgagtgaattaggttggatgaatgtgccaataggcatgggaaatagagtatgaataagagttgatggttg |
7783824 |
T |
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| Q |
133 |
ttctggttttctataaggaagt |
154 |
Q |
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| T |
7783823 |
ttctggttttctagatggaagt |
7783802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 33 - 110
Target Start/End: Original strand, 17294997 - 17295074
Alignment:
| Q |
33 |
caaaggacataatagtgcatgcatttatattgagtgaattaggttggatgaatgtgccaataggcatgggaaatagag |
110 |
Q |
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||||||| |||||||||||| |||| || |||||||||||||||||||||| |||||| |||| |||||||||||| |
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| T |
17294997 |
caaaggaggtaatagtgcatgtctttacatcgagtgaattaggttggatgaatttgccaacaggcgtgggaaatagag |
17295074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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