View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1368_low_50 (Length: 272)
Name: NF1368_low_50
Description: NF1368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1368_low_50 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 30 - 272
Target Start/End: Original strand, 34888685 - 34888943
Alignment:
| Q |
30 |
gacttttgattcagcaactcagacatctgcaaggaaagaaaaat---------------atgcacaaaaagaaacacatcaaattagacacccag-tttc |
113 |
Q |
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| T |
34888685 |
gacttttgattcagcaactcagacatctgcaaggaaagaaaaattagatatatgacaatatgcacaaaaagaaacacatcaaattagacacccagatttc |
34888784 |
T |
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| Q |
114 |
ttaatcattgatatcttcccaactagtcaacttcttatataaccagggtttttaaaacaaaaatgttattagaatatgaatttgtgacaacaaaattcaa |
213 |
Q |
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| T |
34888785 |
ttaatcattgatatctttcaaactagtcaacctcttatataaccagggtttttaaaacaaaaatgttattagaatatgaatttgtgacaacaaaattcaa |
34888884 |
T |
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| Q |
214 |
caactttctttttgaatggttagcgcagttttcaaacatgtctaatgaagtggtagatt |
272 |
Q |
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| T |
34888885 |
caactttctttttgaatggttagcgcagttttcaaacatgtctaatgaagtggtagatt |
34888943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 218
Target Start/End: Original strand, 35483142 - 35483198
Alignment:
| Q |
163 |
ttttaaaac-aaaaatgttattagaatatgaatttgtgacaacaaaattcaacaact |
218 |
Q |
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| T |
35483142 |
ttttaaaaccaaaaatgttatttgaacatctatttgggacaacaaaattcaacaact |
35483198 |
T |
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