View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1368_low_56 (Length: 262)
Name: NF1368_low_56
Description: NF1368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1368_low_56 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 30 - 262
Target Start/End: Original strand, 31182464 - 31182696
Alignment:
| Q |
30 |
tctatcaattcaaaaatgtaaccttattggttctattccaaaagaaatcgggtttttgacaaaccttacttatattgatttgtcaaacaaccttttttct |
129 |
Q |
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| T |
31182464 |
tctatcaattcaaaaatgtaaccttattggttctattccaaaagaaattgggtttttgacaaaccttacttatattgatttgtcaaacaaccttctttct |
31182563 |
T |
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| Q |
130 |
ggtgttattcctgaaaccataggcaacatgagtaaattaaatttacttatcctttgtaataacacaaaggtttctggtccaattccacactccttgtgga |
229 |
Q |
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| T |
31182564 |
ggtgttatttctgaaaccataggcaacatgagtaaattaaatttacttatcctttgtaataacacaaaggtttctggtccaattccacactccttgtgga |
31182663 |
T |
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| Q |
230 |
acatgtctagcttgaacattatcttactttata |
262 |
Q |
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| T |
31182664 |
acatgtctagcttgaacactatcttactttata |
31182696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 30 - 244
Target Start/End: Original strand, 31138749 - 31138963
Alignment:
| Q |
30 |
tctatcaattcaaaaatgtaaccttattggttctattccaaaagaaatcgggtttttgacaaaccttacttatattgatttgtcaaacaaccttttttct |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| || ||||| |
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| T |
31138749 |
tctatcaattcaaaaatgtaaccttattggttctattccaaaagaaattgggtttttgacaaaccttactcttattgatttgtcaaacaacattctttct |
31138848 |
T |
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| Q |
130 |
ggtgttattcctgaaaccataggcaacatgagtaaattaaatttacttatcctttgtaataacacaaaggtttctggtccaattccacactccttgtgga |
229 |
Q |
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| T |
31138849 |
ggtgttattcctgaaaccatagggaacatgagcaaattaaataaactctaccttgctaaaaacaccaagttgtatggaccaattcctcactccttgtgga |
31138948 |
T |
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| Q |
230 |
acatgtctagcttga |
244 |
Q |
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| T |
31138949 |
acatgtctagcttga |
31138963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 35 - 244
Target Start/End: Original strand, 31056942 - 31057151
Alignment:
| Q |
35 |
caattcaaaaatgtaaccttattggttctattccaaaagaaatcgggtttttgacaaaccttacttatattgatttgtcaaacaaccttttttctggtgt |
134 |
Q |
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| T |
31056942 |
caattcaaaaaagtaacctagtcggttccattccacaagaaattgggtttttgacaaatcttgcatatattgatttgtcaaaaaactctctatctggtgg |
31057041 |
T |
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| Q |
135 |
tattcctgaaaccataggcaacatgagtaaattaaatttacttatcctttgtaataacacaaaggtttctggtccaattccacactccttgtggaacatg |
234 |
Q |
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| T |
31057042 |
tattcctgaaaccatagggaacttgagcaaattagatacacttgttctttctaataacaccaagatgtctggtccaattccacattccttgtggaacatg |
31057141 |
T |
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| Q |
235 |
tctagcttga |
244 |
Q |
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| T |
31057142 |
tctagcttga |
31057151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 56 - 244
Target Start/End: Original strand, 31101398 - 31101586
Alignment:
| Q |
56 |
ttggttctattccaaaagaaatcgggtttttgacaaaccttacttatattgatttgtcaaacaaccttttttctggtgttattcctgaaaccataggcaa |
155 |
Q |
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||||||| |||||| ||||||| || || |||||||||||||||||||||||||||||||||||| || | ||||||||||| |||||||||||||| || |
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| T |
31101398 |
ttggttccattccacaagaaattggtttgttgacaaaccttacttatattgatttgtcaaacaactttctatctggtgttatccctgaaaccatagggaa |
31101497 |
T |
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| Q |
156 |
catgagtaaattaaatttacttatcctttgtaataacacaaaggtttctggtccaattccacactccttgtggaacatgtctagcttga |
244 |
Q |
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| T |
31101498 |
catgagcaaattaaatcaactcatgtttgctaataacaccaagttgtatggaccaattcctcactccttgtggaacatgtctagcttga |
31101586 |
T |
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