View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1368_low_57 (Length: 262)
Name: NF1368_low_57
Description: NF1368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1368_low_57 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 2621618 - 2621459
Alignment:
| Q |
1 |
atggggtgtcatcgatttggtccttttttgtttgctggagacgaacaagggaggcgtaaagagaattgtcattttgcatgaggctttcatgagatcctgt |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2621618 |
atggggtgtcatcggtttggtccttttttgtttgctggagacgaacaagggaggcgtaaagagaattgtcattttgcatgaggctttcatgagatcctgt |
2621519 |
T |
|
| Q |
101 |
ttctgcgatcataccattttgaacaaccgcaatgatgtctgcattttgaatggtggataa |
160 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2621518 |
ttccgcgatcataccattttgaacaaccgcaatgatgtctgcattttgaatggtggataa |
2621459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 2674891 - 2675050
Alignment:
| Q |
1 |
atggggtgtcatcgatttggtccttttttgtttgctggagacgaacaagggaggcgtaaagagaattgtcattttgcatgaggctttcatgagatcctgt |
100 |
Q |
| |
|
|||| |||||||| |||| || ||| | ||||| ||||||||||| ||||||| |||||||||||| |||||||||||||||||||| |||||||| || |
|
|
| T |
2674891 |
atggagtgtcatcagtttgatcatttctagtttgttggagacgaacgagggaggtgtaaagagaattttcattttgcatgaggctttcgtgagatcccgt |
2674990 |
T |
|
| Q |
101 |
ttctgcgatcataccattttgaacaaccgcaatgatgtctgcattttgaatggtggataa |
160 |
Q |
| |
|
||| |||| |||||||||| ||||| |||||||||||||||||||| ||||| ||||| |
|
|
| T |
2674991 |
ttccatgatcttaccattttggacaactgcaatgatgtctgcattttggatggttgataa |
2675050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 17 - 160
Target Start/End: Complemental strand, 2436205 - 2436062
Alignment:
| Q |
17 |
ttggtccttttttgtttgctggagacgaacaagggaggcgtaaagagaattgtcattttgcatgaggctttcatgagatcctgtttctgcgatcatacca |
116 |
Q |
| |
|
|||||| ||||| || || |||||| |||| ||||| | ||||| ||| |||||||||||||||||||||| |||||||||||||| |||| ||||| |
|
|
| T |
2436205 |
ttggtcatttttggtgtgttggagatgaactagggatgtgtaaatggaactgtcattttgcatgaggctttcgtgagatcctgtttccatgatcttacca |
2436106 |
T |
|
| Q |
117 |
ttttgaacaaccgcaatgatgtctgcattttgaatggtggataa |
160 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
2436105 |
ttttgaacaactgcaatgatgtctgcattttggatggtggataa |
2436062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 2571400 - 2571559
Alignment:
| Q |
1 |
atggggtgtcatcgatttggtccttttttgtttgctggagacgaacaagggaggcgtaaagagaattgtcattttgcatgaggctttcatgagatcctgt |
100 |
Q |
| |
|
|||| |||||||| ||||||| ||| | ||||| ||||||||||||||||| | |||||||||||||||||||||||||||||| || |||||||| | |
|
|
| T |
2571400 |
atggagtgtcatcactttggtcatttctagtttgttggagacgaacaagggatgtgtaaagagaattgtcattttgcatgaggctatcgtgagatcccat |
2571499 |
T |
|
| Q |
101 |
ttctgcgatcataccattttgaacaaccgcaatgatgtctgcattttgaatggtggataa |
160 |
Q |
| |
|
||| || || |||||||||||| |||||||| |||||||||||||| ||||| ||||| |
|
|
| T |
2571500 |
ttccatgaccagaccattttgaacgaccgcaataatgtctgcattttggatggtagataa |
2571559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 2590051 - 2589893
Alignment:
| Q |
1 |
atggggtgtcatcgatttggtccttttttgtttgctggagacgaacaagggaggcgtaaagagaattgtcattttgcatgaggctttcatgagatcctgt |
100 |
Q |
| |
|
|||||||||| || ||| |||| |||||||||| || ||||||||||||||||| |||| |||||||||| ||||| ||||||||| ||||||||| | |
|
|
| T |
2590051 |
atggggtgtcgtcagtttcgtccctttttgtttgttgaagacgaacaagggaggcataaattgaattgtcatcttgcacgaggctttcgtgagatcctat |
2589952 |
T |
|
| Q |
101 |
ttctgcgatcataccattttgaacaaccgcaatgatgtctgcattttgaatggtggata |
159 |
Q |
| |
|
||| ||| |||||||||||||||| |||||||||||||||||||| ||||| |||| |
|
|
| T |
2589951 |
ttccataatcttaccattttgaacaactgcaatgatgtctgcattttggatggtagata |
2589893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 2449385 - 2449241
Alignment:
| Q |
16 |
tttggtccttttttgtttgctggagacgaacaagggaggcgtaaagagaattgtcattttgcatgaggctttcatgagatcctgtttctgcgatcatacc |
115 |
Q |
| |
|
||||||| ||| | ||||| || |||||||| ||||||| ||||||||| ||||||||||||| |||||||| |||||||||||||| ||||| |||| |
|
|
| T |
2449385 |
tttggtcatttctagtttgttgaagacgaacgagggaggtgtaaagagagctgtcattttgcataaggctttcgtgagatcctgtttccacgatcttacc |
2449286 |
T |
|
| Q |
116 |
attttgaacaaccgcaatgatgtctgcattttgaatggtggataa |
160 |
Q |
| |
|
||||||||| | |||||||| |||||| || ||||||||||| |
|
|
| T |
2449285 |
attttgaacgattgcaatgatatctgcagttctgatggtggataa |
2449241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 16 - 159
Target Start/End: Original strand, 2643057 - 2643200
Alignment:
| Q |
16 |
tttggtccttttttgtttgctggagacgaacaagggaggcgtaaagagaattgtcattttgcatgaggctttcatgagatcctgtttctgcgatcatacc |
115 |
Q |
| |
|
||||||| ||| | ||||| ||||||||||| || |||| |||||||||||| |||| |||| |||||||||||||| ||||||||| ||| | || |
|
|
| T |
2643057 |
tttggtcatttctagtttgttggagacgaacgagagaggtgtaaagagaattttcatcttgcgcgaggctttcatgagttcctgtttccattatcttgcc |
2643156 |
T |
|
| Q |
116 |
attttgaacaaccgcaatgatgtctgcattttgaatggtggata |
159 |
Q |
| |
|
|||||||| || ||||||||||| |||||||| |||||||||| |
|
|
| T |
2643157 |
attttgaaacactgcaatgatgtcagcattttggatggtggata |
2643200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University