View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1368_low_64 (Length: 252)
Name: NF1368_low_64
Description: NF1368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1368_low_64 |
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| [»] scaffold0430 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 247
Target Start/End: Original strand, 17049577 - 17049817
Alignment:
| Q |
7 |
agcacaaaataaataatcaaggacaggacaagtaaccacttttttgtccaccactttagttggggacaactttttgtcccgcggattactaacccaaaaa |
106 |
Q |
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| T |
17049577 |
agcacaaaataaataatcaaggacaagacaagtaaccacttttttgtccaccactttagttggggacaactttttgtccagcggattactaacccaaaaa |
17049676 |
T |
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| Q |
107 |
gacgtttttatcctttggatcttaggttttctcgctatctcacttcttcacaacactgttcacgtccttcctgctaaattgactgcggctgcttctctat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
17049677 |
gacgtttttatcctttggatcttaggttttctcgctgtctcacttcttcacaaaactgttcacatccttcctgctaaattgactgcggctgcttctctat |
17049776 |
T |
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| Q |
207 |
ttgtcaggtaacaatttcgatgcttttttcttcatctcact |
247 |
Q |
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| T |
17049777 |
ttgtcaggtaacaatttcgatgcttttttcttcgtctcact |
17049817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0430 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: scaffold0430
Description:
Target: scaffold0430; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 7 - 247
Target Start/End: Complemental strand, 670 - 430
Alignment:
| Q |
7 |
agcacaaaataaataatcaaggacaggacaagtaaccacttttttgtccaccactttagttggggacaactttttgtcccgcggattactaacccaaaaa |
106 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
670 |
agcacaaaataaataatcaaggatgggacaagtaaccacttttttgtccaccactttagttggggacaactttttgtccagcggattactaacccaaaaa |
571 |
T |
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| Q |
107 |
gacgtttttatcctttggatcttaggttttctcgctatctcacttcttcacaacactgttcacgtccttcctgctaaattgactgcggctgcttctctat |
206 |
Q |
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| T |
570 |
gacgtttttatcctttggatcttaggttttctcgttgtctgacttcttcacaaaactgttcacgtctttcctgctaaattgactgcggcagcttctctat |
471 |
T |
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| Q |
207 |
ttgtcaggtaacaatttcgatgcttttttcttcatctcact |
247 |
Q |
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| T |
470 |
ttgtcaggtaacaatttcgatgcttttttcttcgtctcact |
430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 48532423 - 48532661
Alignment:
| Q |
9 |
cacaaaataaataatcaaggacaggacaagtaaccacttttttgtccaccactttagttggggacaactttttgtcccgcggattactaacccaaaaaga |
108 |
Q |
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| T |
48532423 |
cacaaaataaataatcaaggactc-acaagtaaccacttttttgtccaccactttagtgggggacaactttttgtccagcggattactaacccaaaaaga |
48532521 |
T |
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| Q |
109 |
cgtttttatcctttggatcttaggttttctcgctatctcacttcttcacaacactgttcacgtccttcctgctaaatt-gactgcggctgcttctctatt |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
48532522 |
cgtttttatcctttggatcttaggttttctcgctatctcacttcttcacaacattgttcacgtccttcctgctaacttagactgcggctgcttctctatt |
48532621 |
T |
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| Q |
208 |
tgtcaggtaacaatttcgatgcttttttcttcatctcact |
247 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| |
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| T |
48532622 |
tgtcaggtaacaatttcgatgcttttttcttcgtctcact |
48532661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 9 - 223
Target Start/End: Complemental strand, 39377089 - 39376876
Alignment:
| Q |
9 |
cacaaaataaataatcaaggacaggacaagtaaccacttttttgtccaccactttagttggggacaactttttgtcccgcggattactaacccaaaaaga |
108 |
Q |
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|||||||||||||| ||||||| ||| ||||| || |||||||||||||||||||||||||||||||||||| ||| || ||||||||| ||||| | |
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| T |
39377089 |
cacaaaataaataaccaaggactggataagtagccgcttttttgtccaccactttagttggggacaacttttaatccagcagattactaaattaaaaata |
39376990 |
T |
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| Q |
109 |
cgtttttatcctttggatcttaggttttctcgctatctcacttcttcacaacactgttcacgtccttcctgctaaattgactgcggctgcttctctattt |
208 |
Q |
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|||||||||||||| ||| || |||||||| || ||||||| ||| || ||||||||||| | | |||| ||||||||| |||||| ||| ||| |
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| T |
39376989 |
cgtttttatcctttagataatatgttttctcacttcctcactttgtcataatactgttcacgttgtacttgctcaattgactggggctgcacctc-gttt |
39376891 |
T |
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| Q |
209 |
gtcaggtaacaattt |
223 |
Q |
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| T |
39376890 |
gtcaggtaaccattt |
39376876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 8 - 117
Target Start/End: Original strand, 39534163 - 39534272
Alignment:
| Q |
8 |
gcacaaaataaataatcaaggacaggacaagtaaccacttttttgtccaccactttagttggggacaactttttgtcccgcggattactaacccaaaaag |
107 |
Q |
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||||||||||||||| ||| ||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| |
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| T |
39534163 |
gcacaaaataaataaccaaagacgggacaagtagccgcttttttgtccaccactttagttggggacaactttttgtccaacgaattactaaattaaaaat |
39534262 |
T |
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| Q |
108 |
acgtttttat |
117 |
Q |
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|||||||||| |
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| T |
39534263 |
acgtttttat |
39534272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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