View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1368_low_65 (Length: 252)
Name: NF1368_low_65
Description: NF1368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1368_low_65 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 50751034 - 50751273
Alignment:
| Q |
1 |
cttgttatatatatcttcacgggagaacattgcatggagtttacatcctcgcatatagggtgagggatacannnnnnnnngcagttaaaatacagagtac |
100 |
Q |
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| T |
50751034 |
cttgctatatatatcttcaagggagaacattgcatggagtttacatcctcgcatatagggcgagggatacatttttttt-gcagttaaaatacagagtac |
50751132 |
T |
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| Q |
101 |
tgtcaaagacaaaataggaaaaacaaagttaagcaacacatattaatctatattatttgatcacaaggaatgtatatcatttttattggtcatcatgac- |
199 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
50751133 |
tgtcaaagataaaataggaaaaacaaagttaagcaacacatattaatctatattatttgatcacaaggaatgtacatcatttttattggtcatcatgaca |
50751232 |
T |
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| Q |
200 |
aagaaggaaaagttcagtttgatggtccatacatttatatt |
240 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| |
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| T |
50751233 |
aagaaggaaaatttcagtttgatggtccatacatttatatt |
50751273 |
T |
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