View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1368_low_66 (Length: 251)
Name: NF1368_low_66
Description: NF1368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1368_low_66 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 36 - 251
Target Start/End: Complemental strand, 4238872 - 4238653
Alignment:
| Q |
36 |
tttttattattatatcacggttttaattagttgaatattcaatagatcatactattgtcatgcaagtattattctgtacttaaacttaatttgattgata |
135 |
Q |
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| T |
4238872 |
ttttttttattatatcacggttttaattagttgaatattcaatagatcatactagagtcatgcaagtattattccgtacttaaacttaatttgattgata |
4238773 |
T |
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| Q |
136 |
tttgaattatatctggttacatatata----gttaacatgaaaacatgttggtgcagtcactttgcaatgcttgtggaatcaggcagagaaaggcaagaa |
231 |
Q |
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| T |
4238772 |
tttcaattatgtctggttacatatatagttagttaacatgaaaacatgttggtgcagtcactttgcaatgcttgtggaatcaggcagagaaaggcaagaa |
4238673 |
T |
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| Q |
232 |
gggccatggcagaagctgca |
251 |
Q |
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| T |
4238672 |
gggccatggcagaagctgca |
4238653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 33 - 154
Target Start/End: Complemental strand, 19921039 - 19920922
Alignment:
| Q |
33 |
taatttttattattatatcacggttttaattagttgaatattcaatagatcatactattgtcatgcaagtattattctgtacttaaacttaatttgattg |
132 |
Q |
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| T |
19921039 |
taatttttaatattatatcacggttttaattagttgaatattcaatagatcacactagagtcatgcaagtattattccat-cttaaacttaatttgat-- |
19920943 |
T |
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| Q |
133 |
atatttgaattatatctggtta |
154 |
Q |
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| T |
19920942 |
-tatttgaattatatctagtta |
19920922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 19916113 - 19916049
Alignment:
| Q |
177 |
atgttggtgcagtcactttgcaatgcttgtggaatcaggcagagaaaggcaagaagggccatggc |
241 |
Q |
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| T |
19916113 |
atgttggtgccgtcactttgcaatggttgtggaatcaggcagagaaaggcaagacgggccatggc |
19916049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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