View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1368_low_7 (Length: 479)
Name: NF1368_low_7
Description: NF1368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1368_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 30 - 474
Target Start/End: Complemental strand, 35733804 - 35733381
Alignment:
| Q |
30 |
aactatttgtcaagaagagatggatattgttgttggtaaagtgatcttcctaaactattctaaactgtttttggtcatgtaaattcctacatcgtttgtg |
129 |
Q |
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| T |
35733804 |
aactattggtcaagaagagatggatattgttgttggtaaagtgatcttcctaaactattctaaactgtttttggtcatgtaaattcctacatcgtttgtg |
35733705 |
T |
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| Q |
130 |
atcgctacaaattttttaacaatcagcttgcttggtagaatgaaattaacaaattacttgtagctagccttaacaaatgacttatgtaaattccaataaa |
229 |
Q |
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| T |
35733704 |
atcgctacaaattttttaacaatcagcctgcttggtagaatgaaattaacaaattacttgtagctagccttaacaaatgacttatgtaaattccaataaa |
35733605 |
T |
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| Q |
230 |
gtgtatgattgctacaatttaannnnnnngggagtgtctttgtgatttactggctcagtgaacttgaagagaggttgcnnnnnnnattgtatgtatccta |
329 |
Q |
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| T |
35733604 |
gtgtatgattgctacaatttaatttttttgggagtgtctttgtgatttactggctcagtgaacttgaagagaggttgc-ttttttattgtatgtatccta |
35733506 |
T |
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| Q |
330 |
ccttattttctttgctcaaactttttaatcgtattgtgcattgtgcattgtgcatacatcaaaatggctctggctgattaaaatgtagaccaagtgttga |
429 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
35733505 |
ccttattttctttgctcaaactttttaatcgt-------attgtgcattgtgcatacatc-------------ctgattaaaatgtagaccaagtgttga |
35733426 |
T |
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| Q |
430 |
cttgttacaggacaggaggaatagtttaaccttattttgttggag |
474 |
Q |
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| T |
35733425 |
cttgttacaggacaggaggaatagtttaaccttattttgttggag |
35733381 |
T |
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