View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1368_low_74 (Length: 214)
Name: NF1368_low_74
Description: NF1368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1368_low_74 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 30666801 - 30666995
Alignment:
| Q |
1 |
tttacaaaccatagtaataaaatcatgagcaaattacgagtatttggttttgaattaacaaattgcgtagcaagtcactcactgtttaagtccagtacta |
100 |
Q |
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| T |
30666801 |
tttacaaaccatagtaataaaatcatgagcaaattacgagtatttggttttgaattaacaaaatgcgtagcaagtcactcactgtttaagtccagtacta |
30666900 |
T |
|
| Q |
101 |
aggtactcataagaactcatgactgcataatgagttccagtatcttgtggtgcttggaaaactgaatcaaccataccctttcctctgatgatgtc |
195 |
Q |
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| T |
30666901 |
aggtactcataagaactcatgactgcataatgagttccagtatcttgtggtgcttggaaaactgaatcaaccataccctttcctcttgtgatgtc |
30666995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 4e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 75 - 195
Target Start/End: Original strand, 34436947 - 34437067
Alignment:
| Q |
75 |
tcactcactgtttaagtccagtactaaggtactcataagaactcatgactgcataatgagttccagtatcttgtggtgcttggaaaactgaatcaaccat |
174 |
Q |
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| T |
34436947 |
tcacttactgtctaagtccagtactaatgtactcataagaactcatgactgcataatgagttccagaatcttgtggtgcttggaaaactgtatcaaccat |
34437046 |
T |
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| Q |
175 |
accctttcctctgatgatgtc |
195 |
Q |
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| T |
34437047 |
acccttccctcttgtgatgtc |
34437067 |
T |
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