View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1368_low_8 (Length: 477)
Name: NF1368_low_8
Description: NF1368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1368_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 312; Significance: 1e-176; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 81 - 411
Target Start/End: Complemental strand, 7768589 - 7768254
Alignment:
| Q |
81 |
atataaaggtatttacagcaaaaatatcaagtacatagccaaatgcctaaagtca-----gagactattcgctgtgaaattcccagctgccaacagacgc |
175 |
Q |
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| T |
7768589 |
atataaaggtatttacagcaaaaatatcaagtacatagccaaatgcctaaagtcaagtcagagactattcgctgtgaaattcccagctgccaacagacgc |
7768490 |
T |
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| Q |
176 |
atcgcttgatttctagggagcaagctgacaacagaagcgtggcttgatttcctgggagcactgttgctgcctttgttagactgcgatgaatcaatctttt |
275 |
Q |
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| T |
7768489 |
atcgcttgatttctagggagcaagctgacaacagaagcgtggcttgatttcctggaagcactgttgctgcctttgttagactgcgatgaatcaatctttt |
7768390 |
T |
|
| Q |
276 |
gtctcttgttaattatgttcaaaaatgcatctctccttgaaccatgcatattcttcacataagaaatggcagctttattttcaggattgtcatttgactt |
375 |
Q |
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| T |
7768389 |
gtctcttgttaattatgttcaaaaatgcatctctccttgaaccatgcatattcttcacataagaaatggcagctttattttcaggattgtcatttgactt |
7768290 |
T |
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| Q |
376 |
gtatgatgatcttttactgctactcctttgcttctc |
411 |
Q |
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| T |
7768289 |
gtatgatgatcttttactgctactcctttgcttctc |
7768254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 218 - 384
Target Start/End: Complemental strand, 7779471 - 7779290
Alignment:
| Q |
218 |
cttgatttcctgggagcactgttgctgcctttgttagactgcgatgaatcaatcttttgtctcttgtt---------------aattatgttcaaaaatg |
302 |
Q |
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| T |
7779471 |
cttgatttcttgggagcactgttgcggcctttgtcagactgcgatgaatcgatcttttttctcttatttttctgggaatcaccaattatgttcaaaaatg |
7779372 |
T |
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| Q |
303 |
catctctccttgaaccatgcatattcttcacataagaaatggcagctttattttcaggattgtcatttgacttgtatgatga |
384 |
Q |
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| T |
7779371 |
catctctccttgaactatgcatattcttaatacacgcaatggcagctttattttcatgattgccatttgactgatatgatga |
7779290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 306 - 411
Target Start/End: Complemental strand, 7774560 - 7774452
Alignment:
| Q |
306 |
ctctccttgaaccatgcatattcttcacataagaaatggcagctttattttcaggattgtcatttgactt---gtatgatgatcttttactgctactcct |
402 |
Q |
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| T |
7774560 |
ctcttcttgaaccattcatattcttaagatatgcaatgtcagctttattttgaggattgtcatttgacttataataggaagatcttttactgctactccg |
7774461 |
T |
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| Q |
403 |
ttgcttctc |
411 |
Q |
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| T |
7774460 |
ttgcttctc |
7774452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 218 - 274
Target Start/End: Complemental strand, 7774660 - 7774604
Alignment:
| Q |
218 |
cttgatttcctgggagcactgttgctgcctttgttagactgcgatgaatcaatcttt |
274 |
Q |
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| T |
7774660 |
cttgatttcttgggagcactgtcgctgcctttgtcagactgcgacgaatccatcttt |
7774604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 154
Target Start/End: Original strand, 12815012 - 12815058
Alignment:
| Q |
108 |
caagtacatagccaaatgcctaaagtcagagactattcgctgtgaaa |
154 |
Q |
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| T |
12815012 |
caagtacacagccaaatgcctaaagtcaaagactattcactgtgaaa |
12815058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 363
Target Start/End: Original strand, 12752229 - 12752297
Alignment:
| Q |
295 |
caaaaatgcatctctccttgaaccatgcatattcttcacataagaaatggcagctttattttcaggatt |
363 |
Q |
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| T |
12752229 |
caaaaatgcacctctccttgaaccaggcatattcctaacatatgccctggcagctttattttgaggatt |
12752297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 295 - 363
Target Start/End: Original strand, 12815189 - 12815257
Alignment:
| Q |
295 |
caaaaatgcatctctccttgaaccatgcatattcttcacataagaaatggcagctttattttcaggatt |
363 |
Q |
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| T |
12815189 |
caaaaatgcacctctccttgaaccaggcatattcctaacatatgccctggcagctttattttgaggatt |
12815257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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