View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1368_low_80 (Length: 202)

Name: NF1368_low_80
Description: NF1368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1368_low_80
NF1368_low_80
[»] chr3 (2 HSPs)
chr3 (1-186)||(41067715-41067900)
chr3 (15-48)||(50334953-50334986)
[»] chr1 (8 HSPs)
chr1 (8-52)||(25395946-25395990)
chr1 (4-50)||(5346992-5347038)
chr1 (17-53)||(35489224-35489260)
chr1 (6-53)||(11900894-11900941)
chr1 (19-53)||(1609991-1610025)
chr1 (17-53)||(8900821-8900857)
chr1 (17-49)||(37247603-37247635)
chr1 (17-53)||(49166685-49166721)
[»] chr5 (5 HSPs)
chr5 (5-53)||(7065650-7065698)
chr5 (18-51)||(26221053-26221086)
chr5 (8-53)||(34445288-34445333)
chr5 (18-51)||(42364298-42364331)
chr5 (17-49)||(5240303-5240335)
[»] chr8 (4 HSPs)
chr8 (6-53)||(20694446-20694493)
chr8 (7-49)||(42158448-42158490)
chr8 (6-39)||(41897633-41897666)
chr8 (15-51)||(43140575-43140611)
[»] chr7 (2 HSPs)
chr7 (6-49)||(15996182-15996225)
chr7 (6-53)||(17801448-17801495)
[»] chr2 (1 HSPs)
chr2 (6-49)||(9113986-9114029)
[»] chr6 (4 HSPs)
chr6 (20-53)||(5069967-5070000)
chr6 (18-51)||(29938693-29938726)
chr6 (17-49)||(862899-862931)
chr6 (15-51)||(26388220-26388256)
[»] chr4 (6 HSPs)
chr4 (18-51)||(22720535-22720568)
chr4 (7-51)||(20783718-20783762)
chr4 (17-49)||(22923690-22923722)
chr4 (17-49)||(22928343-22928375)
chr4 (17-49)||(22984622-22984654)
chr4 (17-49)||(22998210-22998242)


Alignment Details
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 41067715 - 41067900
Alignment:
Q  1 ttttatataaatgtgattagataccttaattattcaatgtatctaaaaagttgnnnnnnnctcgtaaatgtgacaggagggagtacttgcataacctgat 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||        ||||||||||||||||||||||||||||||||||||||||    
T  41067715 ttttatataaatgtgattagataccttaattattcaatgtatttaaaaagttatttttttctcgtaaatgtgacaggagggagtacttgcataacctgat 41067814  T
Q  101 taaattctatttgtattttgttctcttccttttaggtgcaaatgacagaagttgctatgaatttcctaagcattcatcatgatgat 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41067815 taaattctatttgtattttgttctcttccttttaggtgcaaatgacagaagttgctatgaatttcctaagcattcatcatgatgat 41067900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 48
Target Start/End: Complemental strand, 50334986 - 50334953
Alignment:
Q  15 gattagataccttaattattcaatgtatctaaaa 48  Q
    |||||||||| |||||||||||||||||||||||    
T  50334986 gattagatacattaattattcaatgtatctaaaa 50334953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000004; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 25395990 - 25395946
Alignment:
Q  8 taaatgtgattagataccttaattattcaatgtatctaaaaagtt 52  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||    
T  25395990 taaatatgattagatacattaattattcaatgtatctaaaaagtt 25395946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 5347038 - 5346992
Alignment:
Q  4 tatataaatgtgattagataccttaattattcaatgtatctaaaaag 50  Q
    ||||||||||||| | ||||| |||||||||||||||||||||||||    
T  5347038 tatataaatgtgaatggatacattaattattcaatgtatctaaaaag 5346992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 35489260 - 35489224
Alignment:
Q  17 ttagataccttaattattcaatgtatctaaaaagttg 53  Q
    |||||||| ||||||||||||||||||||||||||||    
T  35489260 ttagatacattaattattcaatgtatctaaaaagttg 35489224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 6 - 53
Target Start/End: Original strand, 11900894 - 11900941
Alignment:
Q  6 tataaatgtgattagataccttaattattcaatgtatctaaaaagttg 53  Q
    |||||||||||  |||||  ||||||||||||||||||||||||||||    
T  11900894 tataaatgtgaccagatatattaattattcaatgtatctaaaaagttg 11900941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 1610025 - 1609991
Alignment:
Q  19 agataccttaattattcaatgtatctaaaaagttg 53  Q
    |||||| ||||||||||||||||||||||||||||    
T  1610025 agatacattaattattcaatgtatctaaaaagttg 1609991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 8900857 - 8900821
Alignment:
Q  17 ttagataccttaattattcaatgtatctaaaaagttg 53  Q
    |||||||| |||||||||||||||| |||||||||||    
T  8900857 ttagatacattaattattcaatgtacctaaaaagttg 8900821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 37247635 - 37247603
Alignment:
Q  17 ttagataccttaattattcaatgtatctaaaaa 49  Q
    |||||||| ||||||||||||||||||||||||    
T  37247635 ttagatacattaattattcaatgtatctaaaaa 37247603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 49166685 - 49166721
Alignment:
Q  17 ttagataccttaattattcaatgtatctaaaaagttg 53  Q
    |||||||| |||||||||||||||| |||||||||||    
T  49166685 ttagatacattaattattcaatgtaactaaaaagttg 49166721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 7065650 - 7065698
Alignment:
Q  5 atataaatgtgattagataccttaattattcaatgtatctaaaaagttg 53  Q
    ||||||||||||| |||||| |||||||||||||| || ||||||||||    
T  7065650 atataaatgtgatcagatacattaattattcaatgaatttaaaaagttg 7065698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 26221086 - 26221053
Alignment:
Q  18 tagataccttaattattcaatgtatctaaaaagt 51  Q
    ||||||| ||||||||||||||||||||||||||    
T  26221086 tagatacattaattattcaatgtatctaaaaagt 26221053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 34445333 - 34445288
Alignment:
Q  8 taaatgtgattagataccttaattattcaatgtatctaaaaagttg 53  Q
    ||||||||| |||||||||||||||||| ||| | |||||||||||    
T  34445333 taaatgtgactagataccttaattattccatgaacctaaaaagttg 34445288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 42364298 - 42364331
Alignment:
Q  18 tagataccttaattattcaatgtatctaaaaagt 51  Q
    |||||||| |||||||||||||||||||||||||    
T  42364298 tagataccctaattattcaatgtatctaaaaagt 42364331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 5240303 - 5240335
Alignment:
Q  17 ttagataccttaattattcaatgtatctaaaaa 49  Q
    |||||||| ||||||||||||||||||||||||    
T  5240303 ttagatacattaattattcaatgtatctaaaaa 5240335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 20694493 - 20694446
Alignment:
Q  6 tataaatgtgattagataccttaattattcaatgtatctaaaaagttg 53  Q
    ||||||||||| | ||||  ||||||||||||||||||||||||||||    
T  20694493 tataaatgtgacttgataaattaattattcaatgtatctaaaaagttg 20694446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 42158448 - 42158490
Alignment:
Q  7 ataaatgtgattagataccttaattattcaatgtatctaaaaa 49  Q
    |||||||||| | ||||| ||||||||||||||||||||||||    
T  42158448 ataaatgtgactggatacattaattattcaatgtatctaaaaa 42158490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 41897666 - 41897633
Alignment:
Q  6 tataaatgtgattagataccttaattattcaatg 39  Q
    ||||||||||||||||||| ||||||||||||||    
T  41897666 tataaatgtgattagatacattaattattcaatg 41897633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 43140611 - 43140575
Alignment:
Q  15 gattagataccttaattattcaatgtatctaaaaagt 51  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  43140611 gattagatacattaattattcaatgtatctaataagt 43140575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 15996182 - 15996225
Alignment:
Q  6 tataaatgtgattagataccttaattattcaatgtatctaaaaa 49  Q
    |||||| |||||| ||||| ||||||||||||||||||||||||    
T  15996182 tataaacgtgattggatacattaattattcaatgtatctaaaaa 15996225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 6 - 53
Target Start/End: Original strand, 17801448 - 17801495
Alignment:
Q  6 tataaatgtgattagataccttaattattcaatgtatctaaaaagttg 53  Q
    ||||||||| | ||||||| |||||||||||||| |||||||||||||    
T  17801448 tataaatgttactagatacattaattattcaatgaatctaaaaagttg 17801495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 9113986 - 9114029
Alignment:
Q  6 tataaatgtgattagataccttaattattcaatgtatctaaaaa 49  Q
    ||||||||||| ||||||| |||||||||||||| |||||||||    
T  9113986 tataaatgtgactagatacattaattattcaatgaatctaaaaa 9114029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 5070000 - 5069967
Alignment:
Q  20 gataccttaattattcaatgtatctaaaaagttg 53  Q
    ||||| ||||||||||||||||||||||||||||    
T  5070000 gatacattaattattcaatgtatctaaaaagttg 5069967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 29938693 - 29938726
Alignment:
Q  18 tagataccttaattattcaatgtatctaaaaagt 51  Q
    ||||||| ||||||||||||||||||||||||||    
T  29938693 tagatacattaattattcaatgtatctaaaaagt 29938726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 862899 - 862931
Alignment:
Q  17 ttagataccttaattattcaatgtatctaaaaa 49  Q
    |||||||| ||||||||||||||||||||||||    
T  862899 ttagatacattaattattcaatgtatctaaaaa 862931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 26388256 - 26388220
Alignment:
Q  15 gattagataccttaattattcaatgtatctaaaaagt 51  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  26388256 gattagatacattaattattcaatatatctaaaaagt 26388220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 22720568 - 22720535
Alignment:
Q  18 tagataccttaattattcaatgtatctaaaaagt 51  Q
    ||||||| ||||||||||||||||||||||||||    
T  22720568 tagatacattaattattcaatgtatctaaaaagt 22720535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 20783762 - 20783718
Alignment:
Q  7 ataaatgtgattagataccttaattattcaatgtatctaaaaagt 51  Q
    ||||||||||| |||||| ||||||||||||||||  ||||||||    
T  20783762 ataaatgtgatcagatacattaattattcaatgtacttaaaaagt 20783718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 22923722 - 22923690
Alignment:
Q  17 ttagataccttaattattcaatgtatctaaaaa 49  Q
    |||||||| ||||||||||||||||||||||||    
T  22923722 ttagatacattaattattcaatgtatctaaaaa 22923690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 22928375 - 22928343
Alignment:
Q  17 ttagataccttaattattcaatgtatctaaaaa 49  Q
    |||||||| ||||||||||||||||||||||||    
T  22928375 ttagatacattaattattcaatgtatctaaaaa 22928343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 22984654 - 22984622
Alignment:
Q  17 ttagataccttaattattcaatgtatctaaaaa 49  Q
    |||||||| ||||||||||||||||||||||||    
T  22984654 ttagatacattaattattcaatgtatctaaaaa 22984622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 22998242 - 22998210
Alignment:
Q  17 ttagataccttaattattcaatgtatctaaaaa 49  Q
    |||||||| ||||||||||||||||||||||||    
T  22998242 ttagatacattaattattcaatgtatctaaaaa 22998210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University