View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1369-INSERTION-1 (Length: 696)
Name: NF1369-INSERTION-1
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1369-INSERTION-1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 507; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 8 - 588
Target Start/End: Complemental strand, 41764549 - 41763972
Alignment:
| Q |
8 |
catcattgctacactataagaaaggaaaaatacatgtgccttctcagggtctcttgttatgaatttatcattcatctccatttgattgatgaaaattcct |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41764549 |
catcattgctacactataagaaaggaaaaatacatgtgccttctcagggtcttttgttatgaatttatcattcatctccatttgattgatgaaaattcct |
41764450 |
T |
|
| Q |
108 |
tccatggagtatatatctctgcaaggtccatcatggaaaactggaggctccccttcttcgtacacaaatactttgaaccgtttctccatttctaagtaac |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41764449 |
tccatggagtatatatctctgcaaggtccatcatggaaaactggaggctccccttcttcgtacacaaatactttgaaccgtttctccatttctaagtaac |
41764350 |
T |
|
| Q |
208 |
tcctgttaaataaaattttgcaaaattaggtcagtgaattatatcaaacaaaccaaatgtaagtagaatatttaggatagaagnnnnnnnnnntgttgtg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
41764349 |
tcctgttaaataaaattttgcaaaattaggtcagtgaattatatcaaacaaaccaaatgtaagtagaatatttaggatagaa----aaaaaaatgttgtg |
41764254 |
T |
|
| Q |
308 |
tattatttacctgtgaaataagttaggtttgtgatacattggtcctgttggaacatagtctatgtcttgtgtttgttttccatttactgcttttcttatt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41764253 |
tattatttacctgtgaaataagttaggtttgtgatacattggtcctgttggaacatagtctatgtcttgtgtttgttttccatttactgcttttcttatt |
41764154 |
T |
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| Q |
408 |
gcagctctagcttgtagtagatcagcttcgactctgtctaagttgctgagctttcctgccaggtttggtttctgctgaaaaccataaga-tttagattca |
506 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41764153 |
gcagctctagcttgtagtagatcagcttcgactctgtctaagttgctgagctttcctgccaggtttggtttctgctgaaaaccataagattttagattca |
41764054 |
T |
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| Q |
507 |
tagaagttgtgttgggtcaaaagtatatttaaatgtctcaaatactcatgttaaannnnnnngacttggatcattttttatt |
588 |
Q |
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| T |
41764053 |
tagaagttgtgttgggtcaaaagtatatttaaatgtctcaaatattcatgttaaatttttttgacttggatcattttttatt |
41763972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 8 - 220
Target Start/End: Complemental strand, 41756607 - 41756395
Alignment:
| Q |
8 |
catcattgctacactataagaaaggaaaaatacatgtgccttctcagggtctcttgttatgaatttatcattcatctccatttgattgatgaaaattcct |
107 |
Q |
| |
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|||| |||| |||||| ||| |||||||||||||||||||||||| |||||||||||| ||| |||||||||||| || || ||||||| ||||| |
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| T |
41756607 |
catctttgccacactaaaaggaaggaaaaatacatgtgccttctcggggtctcttgttcgaaatcgatcattcatctcaatagcatggatgaaatttcct |
41756508 |
T |
|
| Q |
108 |
tccatggagtatatatctctgcaaggtccatcatggaaaactggaggctccccttcttcgtacacaaatactttgaaccgtttctccatttctaagtaac |
207 |
Q |
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||||||||||||||| | |||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||| |
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| T |
41756507 |
tccatggagtatatacttttgcaaggtccattatggaaaaccggaggctccccttcttcatacacaaatactttgaattgtttctccatttctaaataac |
41756408 |
T |
|
| Q |
208 |
tcctgttaaataa |
220 |
Q |
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|||||||| |||| |
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| T |
41756407 |
tcctgttatataa |
41756395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 588 - 696
Target Start/End: Complemental strand, 22488596 - 22488488
Alignment:
| Q |
588 |
tgaaaaatgcttgatagcacgacaggataacatgcacgaatgcacacgacatatttcaaaccatttgatgaaatgtttttcattttattaattatttatt |
687 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22488596 |
tgaaaaatgcttgatagcacgacagaataacatgcacgaatgcacacgacatatttcaaaccatttgatgaaatgtttttcattttattaattatttatt |
22488497 |
T |
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| Q |
688 |
ctatgccat |
696 |
Q |
| |
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||||||||| |
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| T |
22488496 |
ctatgccat |
22488488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 311 - 481
Target Start/End: Complemental strand, 41756292 - 41756122
Alignment:
| Q |
311 |
tatttacctgtgaaataagttaggtttgtgatacattggtcctgttggaacatagtctatgtcttgtgtttgttttccatttactgcttttcttattgca |
410 |
Q |
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|||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||| | || | ||| |||||||||||||||| |
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| T |
41756292 |
tatttacctgtgaaatgaattaggattgtgatacattggtcctgttggaacatagtctatgtcttgtgttcgattctcgtttcttgcttttcttattgca |
41756193 |
T |
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| Q |
411 |
gctctagcttgtagtagatcagcttcgactctgtctaagttgctgagctttcctgccaggtttggtttctg |
481 |
Q |
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|||||||||||||||||| |||||||| |||||||||| |||||| |||| || |||||||||||||| |
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| T |
41756192 |
gctctagcttgtagtagaccagcttcggttctgtctaagatgctgaattttcttggtaggtttggtttctg |
41756122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 4e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 589 - 696
Target Start/End: Complemental strand, 8558103 - 8557996
Alignment:
| Q |
589 |
gaaaaatgcttgatagcacgacaggataacatgcacgaatgcacacgacatatttcaaaccatttgatgaaatgtttttcattttattaattatttattc |
688 |
Q |
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|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8558103 |
gaaaaatgcttgatagcacgacagaataacatgcatgaatgcacacgacatatttcaaaccatttgatgaaatgtttttcattttattaattatttattc |
8558004 |
T |
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| Q |
689 |
tatgccat |
696 |
Q |
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|||||||| |
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| T |
8558003 |
tatgccat |
8557996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 8e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 105 - 213
Target Start/End: Original strand, 26974053 - 26974161
Alignment:
| Q |
105 |
ccttccatggagtatatatctctgcaaggtccatcatggaaaactggaggctccccttcttcgtacacaaatactttgaaccgtttctccatttctaagt |
204 |
Q |
| |
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||||||||||||||||| | |||||||||||| || ||||| |||||||||||||||||||| || |||||||||||| |||||||||||||||||| |
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| T |
26974053 |
ccttccatggagtatatgcttttgcaaggtccattgtgaaaaaccggaggctccccttcttcgtagacgaatactttgaactgtttctccatttctaagt |
26974152 |
T |
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| Q |
205 |
aactcctgt |
213 |
Q |
| |
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| T |
26974153 |
agctcctgt |
26974161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 588 - 687
Target Start/End: Complemental strand, 33508361 - 33508262
Alignment:
| Q |
588 |
tgaaaaatgcttgatagcacgacaggataacatgcacgaatgcacacgacatatttcaaaccatttgatgaaatgtttttcattttattaattatttatt |
687 |
Q |
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|||||||||||||||||||||||| | ||| ||||||| ||||||||||||| | || || ||||||||| |||||||||||||||||||||||||| |
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| T |
33508361 |
tgaaaaatgcttgatagcacgacatagtgacaagcacgaaggcacacgacatatcttaagccgtttgatgaatcgtttttcattttattaattatttatt |
33508262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 582 - 636
Target Start/End: Complemental strand, 13798515 - 13798461
Alignment:
| Q |
582 |
ttttattgaaaaatgcttgatagcacgacaggataacatgcacgaatgcacacga |
636 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||||| |||||||| |
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| T |
13798515 |
ttttattgaaaaatgcttgatagcacgacatattaacaagcacgaaggcacacga |
13798461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 587 - 636
Target Start/End: Complemental strand, 11210326 - 11210277
Alignment:
| Q |
587 |
ttgaaaaatgcttgatagcacgacaggataacatgcacgaatgcacacga |
636 |
Q |
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||||||||||||||||||||||||| ||||| ||||||| |||||||| |
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| T |
11210326 |
ttgaaaaatgcttgatagcacgacatactaacaagcacgaaggcacacga |
11210277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 578 - 634
Target Start/End: Complemental strand, 31367739 - 31367683
Alignment:
| Q |
578 |
cattttttattgaaaaatgcttgatagcacgacaggataacatgcacgaatgcacac |
634 |
Q |
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|||||||| |||||||||||||||||||||||| ||||| ||||||| |||||| |
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| T |
31367739 |
catttttttatgaaaaatgcttgatagcacgacatactaacaagcacgaaggcacac |
31367683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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