View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1369-INSERTION-3 (Length: 717)
Name: NF1369-INSERTION-3
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1369-INSERTION-3 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 8 - 263
Target Start/End: Complemental strand, 52140545 - 52140290
Alignment:
| Q |
8 |
taaggctcatgagaaacaacgacaagcatttgtttggcagcttaggaaatctatatcatactagtactactctccaaaacctcaaccagaattatgttct |
107 |
Q |
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| T |
52140545 |
taaggctcatgagcaacaatgacatgcatttgtttggcagcttaggaaatctatatcatactagtactactgtccaaaatctcaaccagaattatgttct |
52140446 |
T |
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| Q |
108 |
ctttgatccaacgattccaaatgatgatcacaatctaggaacctcgctttacatgtgtccaaatggatgcacttatggtattacatcgtgtgatcaatgc |
207 |
Q |
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| T |
52140445 |
ctttgatccaacaattccaaatgatgatcacagtctaggaatctcggtttacatgtgtccaaatggatgcacttatggtattacatcgtgtgatcaatgc |
52140346 |
T |
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| Q |
208 |
tcacgacctatgaaccgtgaccaaacatgtcgtgttgctatgaaagatcaagatgt |
263 |
Q |
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| T |
52140345 |
tcgcaacctatgaaccgggacgaaacacgtcatgttgctatgaaagatcaaaatgt |
52140290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 502 - 694
Target Start/End: Complemental strand, 52140259 - 52140067
Alignment:
| Q |
502 |
atagtgtgttgagttgctaaagacttcgttgcagtcaaagatggttttgacgagtgtttttatcaagaacaagaataagaacttcacaatgttacgaaga |
601 |
Q |
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| T |
52140259 |
atagtgtgtggagttgctaaaaacttcattgcagtcaaagatggttttgacaagtgtttttatcaagaacaagaataagaacttcacaatgttacgaaga |
52140160 |
T |
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| Q |
602 |
atttggtattttccttttgtggttttgggctacgtggtttatttcgattgtcttctaccacattcccaaactagtatttcggtaagctatcac |
694 |
Q |
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| T |
52140159 |
atttggtattttccttttgtagttttgggctacatagtttattttgattgtcatctaccgcattccaaagcaagtatttcggtaagttatcac |
52140067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 245 - 416
Target Start/End: Complemental strand, 52130680 - 52130508
Alignment:
| Q |
245 |
ctatgaaagatcaagatgtaactttcatgttgatggatgatttggttattcatcccttctcaccaatttcaattgttacgttacttaacaagttcgattt |
344 |
Q |
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| T |
52130680 |
ctatgaaagatcaaaatgtaattttcatgttgatggatgatttagtgattcagcccatcttagcaatttcagttattacgttaatcaacaagttcaatat |
52130581 |
T |
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| Q |
345 |
caaacaagtccataacttgcaagaaatggtggttgaatttgggatggatgaggta-gattaatttgtcctaat |
416 |
Q |
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| T |
52130580 |
caaacaagttggtgcctctcaagaaattgtggttgagtttggtatgaatgaggtacgattaatttgtcctaat |
52130508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 52130903 - 52130840
Alignment:
| Q |
46 |
agcttaggaaatctatatcatactagtactactctccaaaacctcaaccagaattatgttctct |
109 |
Q |
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| T |
52130903 |
agcttaggcaatctgcatcacactagtagtactctccaaaacctcaaccagaattatgttctct |
52130840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 503 - 596
Target Start/End: Complemental strand, 52130426 - 52130330
Alignment:
| Q |
503 |
tagtgtgttgagttgctaaagacttcgttgcagtcaaagatggttttgacgagtgtttttatcaagaacaagaataaga---acttcacaatgttac |
596 |
Q |
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| T |
52130426 |
tagtgtgttgagttgttgaatacttcgttgcaatctgaaatggttttgattagtgttttcatcaagaacaagaataagaagcacttcacaatgttac |
52130330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 399
Target Start/End: Complemental strand, 52154314 - 52154275
Alignment:
| Q |
360 |
cttgcaagaaatggtggttgaatttgggatggatgaggta |
399 |
Q |
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| T |
52154314 |
cttgcaagaaatggtggttgaattggggctggatgaggta |
52154275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 139; Significance: 2e-72; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 8 - 218
Target Start/End: Original strand, 17525171 - 17525380
Alignment:
| Q |
8 |
taaggctcatgagaaacaacgacaagcatttgtttggcagcttaggaaatctatatcatactagtactactctccaaaacctcaaccagaattatgttct |
107 |
Q |
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||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||| ||||| ||||| |
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| T |
17525171 |
taaggctcatgagctacaacgacatgcatttgtttggcagcttaggaaatctgtatcatactagtactactgtccaaaatctcaaccaaaattacgttct |
17525270 |
T |
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| Q |
108 |
ctttgatccaacgattccaaatgatgatcacaatctaggaacctcgctttacatgtgtccaaatggatgcacttatggtattacatcgtgtgatcaatgc |
207 |
Q |
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||| |||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
17525271 |
cttcgatccaacaattccaaatgatgatcacagcctaggaacctcgttttacatgtgtccaaatggatgcacttaaggtattacatcgtg-gatcaatgc |
17525369 |
T |
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| Q |
208 |
tcacgacctat |
218 |
Q |
| |
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|| | |||||| |
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| T |
17525370 |
tcgcaacctat |
17525380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 513 - 570
Target Start/End: Complemental strand, 17016235 - 17016178
Alignment:
| Q |
513 |
agttgctaaagacttcgttgcagtcaaagatggttttgacgagtgtttttatcaagaa |
570 |
Q |
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| T |
17016235 |
agttgcttaaggcttctctgcaatcaaagatggtattgacgagtgttttcatcaagaa |
17016178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 513 - 570
Target Start/End: Complemental strand, 17546672 - 17546615
Alignment:
| Q |
513 |
agttgctaaagacttcgttgcagtcaaagatggttttgacgagtgtttttatcaagaa |
570 |
Q |
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| T |
17546672 |
agttgcttaaggcttctctgcaatcaaagatggtattgacgagtgttttcatcaagaa |
17546615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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