View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1369-INSERTION-6 (Length: 825)
Name: NF1369-INSERTION-6
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1369-INSERTION-6 |
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| [»] chr2 (7 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 442 - 825
Target Start/End: Complemental strand, 43413210 - 43412824
Alignment:
| Q |
442 |
atgaaacataaacattacttaaaacacgtagtgcatgcaatatccaacatgtatgatgattgaagttagaaatcgatgtacggagtgttattttacacgt |
541 |
Q |
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| T |
43413210 |
atgaaacataaacattacttaaaacacgtagtgcatgcaatatccaacatgtatgatgattgaagttagaaattgatgtacggagtgttattttacacgt |
43413111 |
T |
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| Q |
542 |
gtaaccgtcaatttataaggtgaatctttaaaattagtttctaaaatatcttcataaaagggatagcaaccaatttacttctcaacttag-cccctcaca |
640 |
Q |
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| T |
43413110 |
gtaaccgtcaatttataaggcgactctttaaaattagtttctaaaatatcttcataaaagggatagcaaccaatttacttctcaacttagccccctcaca |
43413011 |
T |
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| Q |
641 |
aggagagatttactataataatcaaatataaaaggggttttgctaacttatgttttaagccatatattaaacaatctaaaaataaaagtagaaatattct |
740 |
Q |
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| T |
43413010 |
aggagagatttactataataatcaaatataaaa-gggtcttgctaacttatgttttaaggcatatgttaaacaatctaaaaataaaagtagaaacattct |
43412912 |
T |
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| Q |
741 |
cttaaattttgtgtattaagttaatcaaaatgnnnnnnnttaaattctaatgcattga---ttagaacaaattatttccacttttaac |
825 |
Q |
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| T |
43412911 |
cttaaattttgtgtattaaattaatcaaaatgaaaaaaattaaattctaatgtattgattttttgagcaaattatttccacttttaac |
43412824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 119 - 339
Target Start/End: Complemental strand, 43413504 - 43413284
Alignment:
| Q |
119 |
tacatacgtaatattgatgatatattttaatacggaatcgatcgtttgatttgtaggtgaatctaatcttacatatatcaatgagtaaagtctaaaaacg |
218 |
Q |
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| T |
43413504 |
tacatacgtaatattgatgatatattttaatacggaatcgatcgtttgatttgtaggtgaatctaatcttacatatatcaatgagtaaagtctaaaaacg |
43413405 |
T |
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| Q |
219 |
cagagacaaaatttaagttgaattgtcnnnnnnnngttgtgtttaattatggttgtttgtagagagtattagtatcagtattcattctagttctagaatt |
318 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43413404 |
cagaaacaaaatttaagttgaattgtcaaaaaaaagttgtgtttaattatggttgtttgtagagagtattagtattagtattcattctagttctagaatt |
43413305 |
T |
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| Q |
319 |
gattaaaagaaaaatatatag |
339 |
Q |
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| T |
43413304 |
gattaaaagaaaaatatatag |
43413284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 43413615 - 43413562
Alignment:
| Q |
8 |
agatcatggattaaagttatgatgaatgaaaatatgattcttttttatatattt |
61 |
Q |
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| T |
43413615 |
agatcatggattaaagttatgatgaatgaaaatatgattcttttttatatattt |
43413562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 146 - 221
Target Start/End: Complemental strand, 43399523 - 43399447
Alignment:
| Q |
146 |
taatacggaatcgatcgtttgatttgtaggtgaatctaatcttac-atatatcaatgagtaaagtctaaaaacgcag |
221 |
Q |
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| T |
43399523 |
taatatggaatcgatcgtttgatttgtaggtgaatataatcttacaatatatcaatgagaaaagtctgaaaacgcag |
43399447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 371 - 428
Target Start/End: Complemental strand, 43399329 - 43399272
Alignment:
| Q |
371 |
atggaatcaacaacattctcaactttttattactagtaaattcttcgagccataaacc |
428 |
Q |
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| T |
43399329 |
atggaatcaacaacattctcaacttttcattactagtaagttcctccagccataaacc |
43399272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 298 - 337
Target Start/End: Complemental strand, 43399409 - 43399370
Alignment:
| Q |
298 |
attcattctagttctagaattgattaaaagaaaaatatat |
337 |
Q |
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| T |
43399409 |
attcattctggttctagaattgatgaaaagaaaaatatat |
43399370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 364 - 398
Target Start/End: Complemental strand, 43413254 - 43413220
Alignment:
| Q |
364 |
atcatgaatggaatcaacaacattctcaacttttt |
398 |
Q |
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| T |
43413254 |
atcatggatggaatcaacaacattctcaacttttt |
43413220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 780 - 825
Target Start/End: Complemental strand, 32854321 - 32854276
Alignment:
| Q |
780 |
ttaaattctaatgcattgattagaacaaattatttccacttttaac |
825 |
Q |
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| T |
32854321 |
ttaatttcaaatgcattgattagaacaaattatttccacttttaac |
32854276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 725 - 823
Target Start/End: Complemental strand, 141432 - 141334
Alignment:
| Q |
725 |
aaagtagaaatattctcttaaattttgtgtattaagttaatcaaaatgnnnnnnnttaaattctaatgcattgattagaacaaattatttccactttta |
823 |
Q |
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| T |
141432 |
aaagtagaaatattctcttgaattttgtgcattcaattaatcaaaagttaaagaattaaattcaaatgcattaattacaacaatttatttccactttta |
141334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 724 - 770
Target Start/End: Complemental strand, 12289126 - 12289080
Alignment:
| Q |
724 |
aaaagtagaaatattctcttaaattttgtgtattaagttaatcaaaa |
770 |
Q |
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| T |
12289126 |
aaaagtagaaatattctcttgaattttgtgtattcaattaatcaaaa |
12289080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 724 - 823
Target Start/End: Original strand, 48855510 - 48855609
Alignment:
| Q |
724 |
aaaagtagaaatattctcttaaattttgtgtattaagttaatcaaaatgnnnnnnnttaaattctaatgcattgattagaacaaattatttccactttta |
823 |
Q |
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| T |
48855510 |
aaaagtagaaatattctcttgaattttgtgtattcaattaatctaaaattaaagaattaaattcaaatgaattaattacaacaatttatttccactttta |
48855609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 724 - 770
Target Start/End: Complemental strand, 53684061 - 53684015
Alignment:
| Q |
724 |
aaaagtagaaatattctcttaaattttgtgtattaagttaatcaaaa |
770 |
Q |
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| T |
53684061 |
aaaagtagaaatattctcttatattttgtgtattcaattaatcaaaa |
53684015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 723 - 766
Target Start/End: Original strand, 53436172 - 53436215
Alignment:
| Q |
723 |
taaaagtagaaatattctcttaaattttgtgtattaagttaatc |
766 |
Q |
| |
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|||||||||||||||| |||||||||||||||||| | |||||| |
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| T |
53436172 |
taaaagtagaaatattttcttaaattttgtgtatttaattaatc |
53436215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 780 - 822
Target Start/End: Complemental strand, 34408100 - 34408058
Alignment:
| Q |
780 |
ttaaattctaatgcattgattagaacaaattatttccactttt |
822 |
Q |
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||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
34408100 |
ttaaatttaaatgcattgattacaacaaattatttccactttt |
34408058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 724 - 770
Target Start/End: Original strand, 5456575 - 5456621
Alignment:
| Q |
724 |
aaaagtagaaatattctcttaaattttgtgtattaagttaatcaaaa |
770 |
Q |
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|||| ||||||||||||||| ||||||||||||| | |||||||||| |
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| T |
5456575 |
aaaaatagaaatattctcttgaattttgtgtattcaattaatcaaaa |
5456621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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