View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1369-INSERTION-7 (Length: 176)
Name: NF1369-INSERTION-7
Description: NF1369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1369-INSERTION-7 |
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Alignment Details
Target: chr4 (Bit Score: 84; Significance: 3e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 43721672 - 43721770
Alignment:
| Q |
17 |
aataaaactcttctatattttaataaaatacaagattacta--cctaatatatatttcattttaaatactattttgtttatcaaagtctcaccatcaat |
113 |
Q |
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| T |
43721672 |
aataaaactcttctatattttaataaaatacaagattactatacctaatacatatttcattttaaatactattttgtttatcaaagtctcaccatcaat |
43721770 |
T |
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Target: chr4; HSP #2
Raw Score: 60; E-Value: 7e-26
Query Start/End: Original strand, 97 - 176
Target Start/End: Original strand, 43721966 - 43722044
Alignment:
| Q |
97 |
aaagtctcaccatcaatgtaatagtaatagaaccaataattagggctgagcaagaggcaatttatgttgagcatcgatgt |
176 |
Q |
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| T |
43721966 |
aaagtctcaccatcaatgta-tactaatagaactaataattagggctgagcaagaggcaatttatgttgagcatcaatgt |
43722044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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