View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13690_low_2 (Length: 263)
Name: NF13690_low_2
Description: NF13690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13690_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 28 - 246
Target Start/End: Complemental strand, 31807690 - 31807472
Alignment:
| Q |
28 |
ggatccaatgaagtgcttcattgacaaaagaaataccatgaagtagtaggatcaactctcctcaatgttgttcctaccacatgaatttcaacagtagtat |
127 |
Q |
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| T |
31807690 |
ggatccaatgaagtgcttcattgacaaaagaaataccatgaagtagtaggatcaactctcctcaatgttgttcctaccacatgaatttcaacagtaatat |
31807591 |
T |
|
| Q |
128 |
gaagaagttgatagactgttagtaggattcaatttacataatgatcttaatgtaattaacttatataacaaacttctaactaatcacaattaacttctac |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31807590 |
gaagaagttgatagactgttagtaggattcaatttacataatgatcttaatgtaattaacttatataacaaacttctaactaatcacaactaacttctac |
31807491 |
T |
|
| Q |
228 |
ttccttaacaagtattaag |
246 |
Q |
| |
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||||||||||||||||||| |
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| T |
31807490 |
ttccttaacaagtattaag |
31807472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 125 - 246
Target Start/End: Complemental strand, 25291088 - 25290967
Alignment:
| Q |
125 |
tatgaagaagttgatagactgttagtaggattcaatttacataatgatcttaatgtaattaacttatataacaaacttctaactaatcacaattaacttc |
224 |
Q |
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| T |
25291088 |
tatgaagaagttcatagactgttagtaggattcaatttacataatgatcttaatgtaattaacttatataaaaaacttctaactaatcacaactaacttc |
25290989 |
T |
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| Q |
225 |
tacttccttaacaagtattaag |
246 |
Q |
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|||||||||||||||||||||| |
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| T |
25290988 |
tacttccttaacaagtattaag |
25290967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 25291471 - 25291421
Alignment:
| Q |
71 |
tagtaggatcaactctcctcaatgttgttcctaccacatgaatttcaacag |
121 |
Q |
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|||||| ||||| ||||||| ||||||||||| | |||||||||||||||| |
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| T |
25291471 |
tagtagaatcaagtctcctccatgttgttcctgctacatgaatttcaacag |
25291421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 74 - 120
Target Start/End: Complemental strand, 5584707 - 5584661
Alignment:
| Q |
74 |
taggatcaactctcctcaatgttgttcctaccacatgaatttcaaca |
120 |
Q |
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|||||| || ||||||| ||||||||||||||||||||||||||||| |
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| T |
5584707 |
taggataaagtctcctccatgttgttcctaccacatgaatttcaaca |
5584661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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