View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13691_high_10 (Length: 230)
Name: NF13691_high_10
Description: NF13691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13691_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 123; Significance: 2e-63; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 10 - 165
Target Start/End: Complemental strand, 6351654 - 6351499
Alignment:
| Q |
10 |
acatcatcatcatgcagtgttgtacttttcaatgcttgaccaaagcctattaacttttcatgcctataaaaacaacctcgttacatagaacaacaacacc |
109 |
Q |
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| T |
6351654 |
acatcatcatcatgcagtgttgtacttttcaatgcttgaccaaaccctattaacttttcatgcctataaaaacaacctcgttacatagaacaacaacacc |
6351555 |
T |
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| Q |
110 |
aaaatcacgtgttcctttgaaagatnnnnnnncacctaaagtgttgtcgagagttt |
165 |
Q |
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| T |
6351554 |
aaaatcacgtgttcctttgaaagataaaaaaaaaactaaagtgttgtcgagagttt |
6351499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 14 - 165
Target Start/End: Complemental strand, 6336665 - 6336514
Alignment:
| Q |
14 |
catcatcatgcagtgttgtacttttcaatgcttgaccaaagcctattaacttttcatgcctataaaaacaacctcgttacatagaacaacaacaccaaaa |
113 |
Q |
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| T |
6336665 |
catcatcatgcagtgttgtacttttcaatgcttgaccaaaccctattaacttttcatgcctataaaaacaacctcgttacatagaacaacaacaccaaaa |
6336566 |
T |
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| Q |
114 |
tcacgtgttcctttgaaagatnnnnnnncacctaaagtgttgtcgagagttt |
165 |
Q |
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| T |
6336565 |
tcacgtgttcctttgaaagataaaaaaaaaactaaagtgttgtcgagagttt |
6336514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 134
Target Start/End: Complemental strand, 6329098 - 6328966
Alignment:
| Q |
14 |
catcatcatgcagtgttgtacttttcaatgcttgaccaaagcctattaacttttcatgcctataaaaac------------aacctcgttacatagaaca |
101 |
Q |
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| T |
6329098 |
catcatcatgcagcgttgtacttttcattgcttgaccaaaccctattaacttttcatgcctataaaaacaaccacacccttaacctcgttacatagaaca |
6328999 |
T |
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| Q |
102 |
acaacaccaaaatcacgtgttcctttgaaagat |
134 |
Q |
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| T |
6328998 |
acaacaccaaaatcacgtgttcctttgaaagat |
6328966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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