View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13691_high_4 (Length: 481)
Name: NF13691_high_4
Description: NF13691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13691_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 16 - 268
Target Start/End: Original strand, 46951447 - 46951721
Alignment:
| Q |
16 |
catcattaaaccttctcctctattcgttgatgattatcacaatattgatcaacaacttctcgataacatcgcttatgatgctcttgtttgggcctctctt |
115 |
Q |
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| T |
46951447 |
catcattaaaccttctcctctattcgttgatgattatcacaatattgatcaacaacttctcgataacatcgcttatgatgctcttgtttgggcctctctt |
46951546 |
T |
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| Q |
116 |
cacggtcttctcatgggagataaatcttaccaggtactcttttcctccttgatttcattatt----attaattattcacaccgtaaactcatttaacaa- |
210 |
Q |
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| T |
46951547 |
cacggtcttctcatgggagataaatcttaccaggtactcttttcctccttgatttcattattattaattaattattcacaccataaactcatttaacaaa |
46951646 |
T |
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| Q |
211 |
-----------------attcatttttactaaggcatgtctccatcaaacaaactaactcaaatgcttctcttta |
268 |
Q |
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| T |
46951647 |
caattttttttttttttattcatttttactaaggcatgtctccatctaacaaactaactcaaatgcttctcttta |
46951721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 297 - 468
Target Start/End: Original strand, 46951766 - 46951935
Alignment:
| Q |
297 |
tttgtcagaatcatatattgtaccaccaagtagcttttacaaaatcactgtgattgcacttattagtcctggcgtaaataaattaggtttaaaaagaaga |
396 |
Q |
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| T |
46951766 |
tttgtcagaatcatatattgtaccaccaagtagcttttacaaaatcactgtgattgcacttattagtcctggcgtaaataaattaggtttaaaaagaaga |
46951865 |
T |
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| Q |
397 |
acaagaattatataannnnnnnncttcttctaattacagaaatcaggaatgattcctggtgttggattgatg |
468 |
Q |
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| T |
46951866 |
acaaaaat--tataattttttttcttcttctaattacagaaatcaggaatggttcctggtgttggattgatg |
46951935 |
T |
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