View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13691_high_5 (Length: 459)
Name: NF13691_high_5
Description: NF13691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13691_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 16 - 444
Target Start/End: Complemental strand, 31772589 - 31772159
Alignment:
| Q |
16 |
ataaggattacactcccgtccaaactaactaacatgttacttcattgctaaagtctattagagataagttggatgaggggctcctaggctatttgaggta |
115 |
Q |
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| T |
31772589 |
ataaggattacactcccgtccaaactaactaacatgttacttcattgctaaagtctattagagatgagttggatgaggggctcctaggctaattgaggta |
31772490 |
T |
|
| Q |
116 |
ctaaagagaaaagactcaactttacaatgcataaaatgttttggcatcctgaagaaagtgtttttcatattaacaca--taacacaactcttgaaaaaat |
213 |
Q |
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| T |
31772489 |
ctaaagagaaaatactcaactttacaatgcataaaatgttttggcatcctgaagaaagtgtttttcatattaacacacataacacaactcttgaaaaaat |
31772390 |
T |
|
| Q |
214 |
taacttggataccgaagccaactcaaaacatcggagggttaatttaaaggtccatagattatcgacaacatcatttttaaggaaaagtgcatcgtcaaca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31772389 |
taacttggataccgaagccaactcaaaacatcggagggttaatttaaaggtccatagattatcgacaacatcatttttaaggaaaagtgcatcgtcaaca |
31772290 |
T |
|
| Q |
314 |
tattacaggtgagacacaaccaacctcgagttccccactttgaaacatgagaacatattgaactcttcggaacgcctaatcgagccacttagaccctcta |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
31772289 |
tattacaggtgagacacaaccaacctcgagttccccactttgaaacatgagaacatattgaactcctcggaacgcctaatcgagccacttagaccctcta |
31772190 |
T |
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| Q |
414 |
ccactatgaggaataggaaatgagtaagaag |
444 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
31772189 |
ccactatgaggaataggaaatgagtaagaag |
31772159 |
T |
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