View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13691_high_6 (Length: 415)
Name: NF13691_high_6
Description: NF13691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13691_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 22 - 401
Target Start/End: Complemental strand, 40286332 - 40285954
Alignment:
| Q |
22 |
aaatttctctatagtaaactttttgttaaacgcaaggacgtgttaacttaggtgttggaaattgaagtatatagcttaattacattggtaggttcagaac |
121 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40286332 |
aaatttctctatagtaaattttttgttaaacgcaaggacgtgttaacttaggtgttggaaattgaagtatatagcttaattacattggtaggttcagaac |
40286233 |
T |
|
| Q |
122 |
atagcaagagaacatacgcgttaatttgttaaggttttggttcaatactaaatctcaagttcacctttgtattttgttgctttttctatttggataaaca |
221 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
40286232 |
atagcaagagaacatacacgttaatttgttaaggttttggttcaatactaaatctcaagttcacctttgtattttgttgccttttctatttggataaaca |
40286133 |
T |
|
| Q |
222 |
attaagcctttatagcataaacacttatcatagctattgttacaacaaaagataaaataagtccnnnnnnnntcatataagttgttttcatatgttatcc |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
40286132 |
attaagcctttatagcataaacacttatcatagctattgttacaacaaaagataaaataagt-caaaaaaaatcatataagttgttttcatatgttatcc |
40286034 |
T |
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| Q |
322 |
tatatagcttatgaaaataacttatgaacatgttataatcagtagataaactcatattaaaaataatgaatatacttttg |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40286033 |
tatatagcttatgaaaataacttatgaacatgttataatcagtagataaactcatattaaaaataatgaatatacttttg |
40285954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Complemental strand, 26284862 - 26284821
Alignment:
| Q |
300 |
aagttgttttcatatgttatcctatatagcttatgaaaataa |
341 |
Q |
| |
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||||||||||| || |||||||| |||||||||||||||||| |
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| T |
26284862 |
aagttgttttcgtaagttatcctgtatagcttatgaaaataa |
26284821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 341
Target Start/End: Original strand, 31862493 - 31862537
Alignment:
| Q |
297 |
tataagttgttttcatatgttatcctatatagcttatgaaaataa |
341 |
Q |
| |
|
|||||| |||||||||| ||||||||| | ||||||||||||||| |
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|
| T |
31862493 |
tataagatgttttcataagttatcctagagagcttatgaaaataa |
31862537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 279
Target Start/End: Original strand, 17942059 - 17942117
Alignment:
| Q |
221 |
aattaagcctttatagcataaacacttatcatagctattgttacaacaaaagataaaat |
279 |
Q |
| |
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|||||||| ||||||||||| |||||||| || ||||| ||| ||||||||||||||| |
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|
| T |
17942059 |
aattaagcacttatagcataagcacttatcttaactatttttaaaacaaaagataaaat |
17942117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 341
Target Start/End: Original strand, 5924054 - 5924099
Alignment:
| Q |
296 |
atataagttgttttcatatgttatcctatatagcttatgaaaataa |
341 |
Q |
| |
|
|||||||||||||||||| ||||||||| | |||||||| |||||| |
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|
| T |
5924054 |
atataagttgttttcataagttatcctagagagcttatggaaataa |
5924099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 341
Target Start/End: Original strand, 25479581 - 25479625
Alignment:
| Q |
297 |
tataagttgttttcatatgttatcctatatagcttatgaaaataa |
341 |
Q |
| |
|
||||||||||||||||| | ||||||| | ||||||||||||||| |
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|
| T |
25479581 |
tataagttgttttcataagctatcctagagagcttatgaaaataa |
25479625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 341
Target Start/End: Original strand, 237397 - 237441
Alignment:
| Q |
297 |
tataagttgttttcatatgttatcctatatagcttatgaaaataa |
341 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||| | |||||| |
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| T |
237397 |
tataagttgttttcataagttatcctatagagcttacggaaataa |
237441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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