View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13691_high_7 (Length: 311)
Name: NF13691_high_7
Description: NF13691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13691_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 5 - 295
Target Start/End: Original strand, 40286298 - 40286583
Alignment:
| Q |
5 |
ttgcgtttaacaaaaaatttactatagagaaattgccaaaagtagttgatttttccgagaaaactttaaacaagtcatttcatgcatttaacatatacta |
104 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40286298 |
ttgcgtttaacaaaaaatttactatagagaaatttccaaaagtagtttatttttcggagaaaactttaaccaagtcatttcatgcatttaacatatacta |
40286397 |
T |
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| Q |
105 |
taccaaaagcatagcaacannnnnnnnnncaaagaacatcatatacagtaagtgtggaaaagatgaacattgcaaggtcaaacgtgcgccacaacatatc |
204 |
Q |
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|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
40286398 |
taccaaaagcatagtaacattttttttt-caaagaacatcatatacagtaagtgtggaaaagatgaacattgcaaggtcaaccgtgagccacaacatatc |
40286496 |
T |
|
| Q |
205 |
aaatgtctccgtagtcttttaccaacttaattacgagacaaaaaatatagcatttctagtcacacgaacctattgaagtgtagatacaaat |
295 |
Q |
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||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40286497 |
aaatgtctccgtagtcttttaccaacttat----gacacaaaaaatatagcatttctagtcacacgaacctattgaagtgtagatacaaat |
40286583 |
T |
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