View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13691_high_9 (Length: 236)
Name: NF13691_high_9
Description: NF13691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13691_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 15517715 - 15517935
Alignment:
| Q |
1 |
ttaatcttcaagatcattgtttaatatcctctcaaaaatatcatagtttaatttacaaatcggtgaaaatgtatgcaacaagacttctttccatgtacaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
15517715 |
ttaatcttcaagatcattgtttaatatcctctcaaaaatatcatagtttaatttacaaatcagagaaaatgtatgcaacaagacttctttccatgtacaa |
15517814 |
T |
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| Q |
101 |
aaagaatcctagtgcactttcagatccaccaccatcaggaccaaattcaagttatcttgtgatattggatgaagaagctcaaacttactcttgttttggt |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15517815 |
aaagaatcctagtgcactttcagacccaccaccatcggggccaaattcaagttatcttgtgatattggatgaagaagctcaaacttactcttgttttggt |
15517914 |
T |
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| Q |
201 |
ttgtgcaaggatactagaatc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
15517915 |
ttgtgcaaggatactagaatc |
15517935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 15 - 204
Target Start/End: Original strand, 15522019 - 15522208
Alignment:
| Q |
15 |
cattgtttaatatcctctcaaaaatatcatagtttaatttacaaatcggtgaaaatgtatgcaacaagacttctttccatgtacaaaaagaatcctagtg |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
15522019 |
cattgtttaatatcctctcaaaaatatcatagtttaatttataaatcggtgaaaatgtatgcaacaagacttctttccatgtacaaaaggaatcctagtg |
15522118 |
T |
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| Q |
115 |
cactttcagatccaccaccatcaggaccaaattcaagttatcttgtgatattggatgaagaagctcaaacttactcttgttttggtttgt |
204 |
Q |
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| T |
15522119 |
ctctttcagatccaccaccatcaggaccaaattcaagttatcttgtgatattggatgaagtagctcaaacttactcttgttttggtttgt |
15522208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 40 - 211
Target Start/End: Original strand, 15545612 - 15545783
Alignment:
| Q |
40 |
atcatagtttaatttacaaatcggtgaaaatgtatgcaacaagacttctttccatgtacaaaaagaatcctagtgcactttcagatccaccaccatcagg |
139 |
Q |
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||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
15545612 |
atcatagtttaatctacaaatcagagaaaatgtatgcaacaagacttctttccatgtacaaaatgaatcctagtgcactttcagacccaccaccatcagg |
15545711 |
T |
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| Q |
140 |
accaaattcaagttatcttgtgatattggatgaagaagctcaaacttactcttgttttggtttgtgcaagga |
211 |
Q |
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| T |
15545712 |
accaaattcaagttatcttgtgatattggatgaagaagctcaaacttactgctgttttggtttgtgcaagga |
15545783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 40 - 221
Target Start/End: Original strand, 15528175 - 15528356
Alignment:
| Q |
40 |
atcatagtttaatttacaaatcggtgaaaatgtatgcaacaagacttctttccatgtacaaaaagaatcctagtgcactttcagatccaccaccatcagg |
139 |
Q |
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|||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| || |
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| T |
15528175 |
atcataatttaatctacaaatcagtgaaaatgtatgcaacaagacttctttccatgtacaaaaagaatcctagtgctctttcagacccaccaccatcggg |
15528274 |
T |
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| Q |
140 |
accaaattcaagttatcttgtgatattggatgaagaagctcaaacttactcttgttttggtttgtgcaaggatactagaatc |
221 |
Q |
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| T |
15528275 |
gccaaattcaagttatcttgtgatattggatgaagaagctcaaacttactcttgttttggtttgtccaaagacaatagaatc |
15528356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 63 - 213
Target Start/End: Original strand, 15550365 - 15550515
Alignment:
| Q |
63 |
gtgaaaatgtatgcaacaagacttctttccatgtacaaaaagaatcctagtgcactttcagatccaccaccatcaggaccaaattcaagttatcttgtga |
162 |
Q |
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|||| |||||||||| ||||||||||||||||||| |||| ||| |||||||| |||||||||| |||||||||||| |||||||| |||||||||| | |
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| T |
15550365 |
gtgataatgtatgcagcaagacttctttccatgtataaaaggaaccctagtgctctttcagatcaaccaccatcaggtccaaattccggttatcttgtaa |
15550464 |
T |
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| Q |
163 |
tattggatgaagaagctcaaacttactcttgttttggtttgtgcaaggata |
213 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||| ||||||| |
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| T |
15550465 |
tattggatgaagaagctcaaacttactctttctttggattgtggaaggata |
15550515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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