View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13691_low_5 (Length: 466)
Name: NF13691_low_5
Description: NF13691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13691_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 7e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 259 - 428
Target Start/End: Original strand, 50409976 - 50410145
Alignment:
| Q |
259 |
agaatcttatgaagatgaatttgagacattgtcaacgacgaggaatgagtcagctaagggttcgagtagcgtcccacgagttcccaaacaggagcttgtg |
358 |
Q |
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| T |
50409976 |
agaatcttatgaagatgaatttgagacgttgtcaacgacgaggaacgagtcagctaagggttcgagtagcgtcccacgagttcccaaacaggagcttgtg |
50410075 |
T |
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| Q |
359 |
gatgaagaagaatttgatagattgatggaagaacgtgttaattctaggtttttccgttttgctgatgatg |
428 |
Q |
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| T |
50410076 |
gatgaagaagaatttgatagattgatggaagaacgtgttaattctaggtttttccgttttgctgaagatg |
50410145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 49 - 149
Target Start/End: Original strand, 50409766 - 50409866
Alignment:
| Q |
49 |
gaagccgctgacgtcgatagcgatgacagcgagttcagcgatttcagcgacggtacattctctctattccttcatttgttgatctcgctagaaatgttag |
148 |
Q |
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| T |
50409766 |
gaagccgctgacgtcgatagcgatgacagcgagttcagcgatttcagcgacggtacattctctctattccttcatttgttgatctcgctagaaatgttag |
50409865 |
T |
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| Q |
149 |
g |
149 |
Q |
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| T |
50409866 |
g |
50409866 |
T |
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