View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13692_high_1 (Length: 787)

Name: NF13692_high_1
Description: NF13692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13692_high_1
NF13692_high_1
[»] chr8 (17 HSPs)
chr8 (8-770)||(5920291-5921047)
chr8 (84-450)||(5983554-5983911)
chr8 (33-450)||(5958982-5959393)
chr8 (142-450)||(5948002-5948298)
chr8 (212-450)||(5886717-5886949)
chr8 (142-470)||(5842349-5842671)
chr8 (142-470)||(5849059-5849381)
chr8 (126-201)||(5841883-5841958)
chr8 (126-201)||(5848593-5848668)
chr8 (126-201)||(5886202-5886277)
chr8 (488-646)||(42456825-42456983)
chr8 (504-618)||(41581075-41581189)
chr8 (8-65)||(5842224-5842281)
chr8 (8-65)||(5848934-5848991)
chr8 (8-65)||(5886525-5886582)
chr8 (599-646)||(16677124-16677171)
chr8 (519-610)||(31645145-31645236)
[»] chr2 (14 HSPs)
chr2 (493-646)||(5357552-5357705)
chr2 (360-449)||(42788746-42788835)
chr2 (489-646)||(27249739-27249896)
chr2 (487-595)||(25271796-25271904)
chr2 (491-630)||(29923843-29923982)
chr2 (570-646)||(42013377-42013453)
chr2 (490-562)||(29699507-29699579)
chr2 (600-646)||(12037306-12037352)
chr2 (558-630)||(14389320-14389393)
chr2 (586-630)||(4964140-4964184)
chr2 (506-625)||(6069134-6069251)
chr2 (599-646)||(29699591-29699638)
chr2 (487-548)||(3848157-3848218)
chr2 (491-536)||(11915371-11915416)
[»] chr6 (7 HSPs)
chr6 (491-646)||(33629362-33629516)
chr6 (490-549)||(2285561-2285620)
chr6 (489-547)||(3445346-3445404)
chr6 (490-646)||(27176962-27177118)
chr6 (558-630)||(33929922-33929994)
chr6 (490-547)||(33900099-33900156)
chr6 (487-646)||(21611017-21611176)
[»] chr7 (4 HSPs)
chr7 (489-646)||(2729785-2729937)
chr7 (493-548)||(28443764-28443819)
chr7 (558-646)||(6687755-6687844)
chr7 (491-597)||(7682728-7682834)
[»] chr4 (6 HSPs)
chr4 (490-646)||(18489619-18489774)
chr4 (490-646)||(21512017-21512173)
chr4 (482-646)||(12868429-12868594)
chr4 (489-646)||(24699347-24699504)
chr4 (490-646)||(9672114-9672270)
chr4 (489-630)||(45073218-45073356)
[»] chr3 (5 HSPs)
chr3 (491-646)||(54524940-54525095)
chr3 (519-646)||(39028122-39028249)
chr3 (573-646)||(48723349-48723422)
chr3 (487-646)||(31984362-31984519)
chr3 (490-646)||(51380958-51381110)
[»] chr5 (2 HSPs)
chr5 (490-646)||(10315713-10315869)
chr5 (605-646)||(37283756-37283797)
[»] chr1 (9 HSPs)
chr1 (498-646)||(68900-69046)
chr1 (582-646)||(22023136-22023200)
chr1 (490-548)||(28108185-28108244)
chr1 (489-548)||(36979733-36979792)
chr1 (491-548)||(25992971-25993028)
chr1 (570-613)||(33150390-33150433)
chr1 (571-646)||(46878162-46878237)
chr1 (490-648)||(46915909-46916067)
chr1 (360-444)||(51044664-51044748)


Alignment Details
Target: chr8 (Bit Score: 660; Significance: 0; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 660; E-Value: 0
Query Start/End: Original strand, 8 - 770
Target Start/End: Original strand, 5920291 - 5921047
Alignment:
Q  8 tgagatgaagaggtaaacaacccaatgaccatgtatcttcataaggggaaggattagacattggttgtaagatttctggtattggattttgaatgtgaac 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5920291 tgagatgaagaggtaaacaacccaatgaccatgtatcttcataaggggaaggattagacattggttgtaagatttctggtattggattttgaatgtgaag 5920390  T
Q  108 caaattgccattataatcataatggttattgattatgtctacctttgtatcaatttggtgaaaattaccttgtagatttggagatgaggttggatagcat 207  Q
     |||||||||||||||      ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5920391 gaaattgccattataa------tggttattgatcatgtctacctttgtatcaatttggtgaaaattaccttgtagatttggagatgaggttggatagcat 5920484  T
Q  208 agttgatcttcatggtgatggttgaagtttagaatcacattagggtttgcatttatagggagtatactttccatagaaccaatatttttattgtaggggg 307  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5920485 agttgatcttcatggtgatggttgaaatttagaatcacattagggtttgcatttatagggagtaaactttccatagaaccaatatttttattgtaggggg 5920584  T
Q  308 tgtgaatattagaaaatgtggtgaaagatggaattataccatgagaagggattttcttcttcatggttgaattccaaaagtttttcacctcattatctgt 407  Q
    ||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5920585 tgtgaatattagaaaatgtggggaaagatggaaagataccatgagaagggattttcttcttcatggttgaattccaaaagtttttcacctcattatctgt 5920684  T
Q  408 tcttccaggtaagtgcttggcaatctgagcccacctgtccaaacaaatttaaatctttttgagagaagtactggaaacatttgaaaattgttgttcacac 507  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5920685 tcttccaggtaagtgcttcgcaatctgagcccacctgtccaaacaaatttaaatctttttgagagaattactggaaacatttgaaaattgttgttcacac 5920784  T
Q  508 ttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcggcagttaactgctgatgagatt 607  Q
    ||||||||||||| ||||||| |||||||  |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||    
T  5920785 ttctaacaaggctaaaacacagcagaaaaatacgtaaatgtctattggccgttaattgttgccagttaaaatatatcggaagttaactgccgatgagatt 5920884  T
Q  608 atattggtaaagtactggtgtttcctagcattgagtgaaatatttttaattttgataatgacaaatgtctataagatttcagctatgggttaagaacttg 707  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5920885 atattggtaaagtactggtgtttcctagcattgagtgaaacattttgaattttgataatgacaaatgtctataagatttcagctatgggttaagaacttg 5920984  T
Q  708 atcatatagctttaagagacggagtttaaattctctaaacagttgcgaaataatcaataatgt 770  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5920985 atcatatagctttaagagacggagtttaaattctctaaacagttgctaaataatcaataatgt 5921047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 84 - 450
Target Start/End: Original strand, 5983554 - 5983911
Alignment:
Q  84 tggtattggattttgaatgtgaaccaaattgccattataatcataatggttattgattatgtctacctttgtatcaatttggtgaaaattaccttgtaga 183  Q
    ||||||||||||||||||||||   |||||| |||||||||      ||| ||||||   ||||||||||||||||||||| ||||||||||||||||||    
T  5983554 tggtattggattttgaatgtgagggaaattggcattataat------ggtcattgat---gtctacctttgtatcaatttgatgaaaattaccttgtaga 5983644  T
Q  184 tttggagatgaggttggatagcatagttgatcttcatggtgat---ggttgaagtttagaatcacattagggtttgcatttatagggagtatactttcca 280  Q
    |||||||||||||||| || | |||| | ||||| ||||| ||   | |||||||| || |||||||||||||||||||||| ||||| |    ||||||    
T  5983645 tttggagatgaggttgaatggtataggtaatcttgatggttataatgattgaagttgaggatcacattagggtttgcatttaaagggaatgagttttcca 5983744  T
Q  281 tagaaccaatatttttattgtagggggtgtgaatattagaaaatgtggtgaaagatggaattataccatgagaagggattttcttcttcatggttgaatt 380  Q
    | |||||||||||   || ||||||||||||||| | |||||||||||||||||||||||| ||| ||||| || ||||||||||||| |||||||||||    
T  5983745 ttgaaccaatatt---atggtagggggtgtgaatttcagaaaatgtggtgaaagatggaataatatcatgacaaaggattttcttctttatggttgaatt 5983841  T
Q  381 ccaaaagtttttcacctcattatctgttcttccaggtaagtgcttggcaatctgagcccacctgtccaaa 450  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||    
T  5983842 ccaaaagtttttcacctcattatctgttcttccaggtaagtgttttgcaatctgagcccatctgtccaaa 5983911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 33 - 450
Target Start/End: Original strand, 5958982 - 5959393
Alignment:
Q  33 tgaccatgtatcttcataaggggaaggattagacattggttgtaagatttctggt---attggattttgaatgtgaaccaaattgccattataatcataa 129  Q
    ||||||||||||||||||||  ||| ||||||| ||||||||||  || | | ||   || ||||||||||||||||  |||||| |||||||||         
T  5958982 tgaccatgtatcttcataagtagaaagattagatattggttgtacaatattttgtgccatcggattttgaatgtgaaggaaattggcattataat----- 5959076  T
Q  130 tggttattgattatgtctacctttgtatcaatttggtgaaaattaccttgtagatttggagatgaggttggatagcatagttgatcttcatggtgatggt 229  Q
     ||| ||||||   ||||||||||||||||||||| |||||||||| |||  |||||||||||||||||| || | |||| | ||||| ||||||||| |    
T  5959077 -ggtcattgat---gtctacctttgtatcaatttgatgaaaattactttgctgatttggagatgaggttgaatggtataggtaatcttgatggtgatgat 5959172  T
Q  230 ---tgaagtttagaatcacattagggtttgcatttatagggagtatactttccatagaaccaatatttttattgtagggggtgtgaatattagaaaatgt 326  Q
       ||||||| ||  ||||||| ||||||||||||| |||||      ||||||| |||||| ||||   || ||| |||||||||| || |||||||||    
T  5959173 gattgaagttgagggtcacattcgggtttgcatttaaagggaaggagttttccattgaaccagtatt---atggtatggggtgtgaacatcagaaaatgt 5959269  T
Q  327 ggtgaaagatggaattataccatgagaagggattttcttcttcatggttgaattccaaaagtttttcacctcattatctgttcttccaggtaagtgcttg 426  Q
    | ||||||||||| | ||| | |||||| | ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||     
T  5959270 gatgaaagatggagtaatatcgtgagaatgaattttcttctttatggtagaattccaaaagtttttcacctcattatctgttcttccagttaagtgtttt 5959369  T
Q  427 gcaatctgagcccacctgtccaaa 450  Q
    |||||||||||||| |||||||||    
T  5959370 gcaatctgagcccatctgtccaaa 5959393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 142 - 450
Target Start/End: Original strand, 5948002 - 5948298
Alignment:
Q  142 atgtctacctttgtatcaatttggtgaaaattaccttgtagatttggagatgaggttggatagcatagttgatcttcatggtgat---ggttgaagttta 238  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || | |||| | ||||| ||||| ||   | |||||||| |    
T  5948002 atgtctacctttgtatcaatttgatgaaaattaccttgtagatttggagatgaggttgaatggtataggtaatcttgatggttataatgattgaagttga 5948101  T
Q  239 gaatcacattagggtttgcatttatagggagtatactttccatagaaccaatatttttattgtagggggtgtgaatattagaaaatgtggtgaaagatgg 338  Q
    | |||||||||||||||||||||| ||||| |    ||||||| ||||||||||| |          |||      || |||||||||||||||||||||    
T  5948102 ggatcacattagggtttgcatttaaagggaatgagttttccattgaaccaatattat----------ggtc-----atcagaaaatgtggtgaaagatgg 5948186  T
Q  339 aattataccatgagaagggattttcttcttcatggttgaattccaaaagtttttcacctcattatctgttcttccaggtaagtgcttggcaatctgagcc 438  Q
    ||| |||||||||||| ||||||| ||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||| ||||||    
T  5948187 aataataccatgagaaaggatttttttctttatggttgaattccaaaagttttttatctcattatctgttcttccaggtaagtgctttgcaatttgagcc 5948286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 212 - 450
Target Start/End: Original strand, 5886717 - 5886949
Alignment:
Q  212 gatcttcatggtgatggttgaagtttagaatcacattagggtttgcatttatagggagtatactttccatagaaccaatatttttattgtagggggtgtg 311  Q
    |||||| ||||| | | ||||||||||| |||||||||||||||||||||| ||| |  | ||||| | |||||||  ||||      ||||||| ||||    
T  5886717 gatcttgatggtaaggattgaagtttaggatcacattagggtttgcatttaaaggaaagaaacttttcttagaaccggtatt------gtaggggatgtg 5886810  T
Q  312 aatattagaaaatgtggtgaaagatggaattataccatgagaagggattttcttcttcatggttgaattccaaaagtttttcacctcattatctgttctt 411  Q
    ||||| | |||||| ||||||||||||||   || ||| ||||  || ||| ||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  5886811 aatatcataaaatggggtgaaagatggaacattatcataagaaatgagttttttcttcatgcttgaattccaaaagtttttcacctcattatccgttctt 5886910  T
Q  412 ccaggtaagtgcttggcaatctgagcccacctgtccaaa 450  Q
    || ||||||||||| ||||| || ||||| |||||||||    
T  5886911 cctggtaagtgcttagcaatttgtgcccatctgtccaaa 5886949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 142 - 470
Target Start/End: Original strand, 5842349 - 5842671
Alignment:
Q  142 atgtctacctttgtatcaatttggtgaaaattaccttgtagatttggagatgaggttggatagcatagttgatcttcatggtgatggttgaagtttagaa 241  Q
    ||||||||| ||||| || |||||||||||   | ||| | ||||||||| ||| ||| |  | |||| ||||||| ||||||| | ||||||||||| |    
T  5842349 atgtctaccattgtaccagtttggtgaaaa---cattgcatatttggagacgagtttgaaaggtataggtgatcttgatggtgaggattgaagtttagca 5842445  T
Q  242 tcacattagggtttgcatttatagggagtatactttccatagaaccaatatttttattgtagggggtgtgaatattag---aaaatgtggtgaaagatgg 338  Q
    ||||||||||||||||||||| ||| |  | | ||||| || |||||      | | |||||| |  |||||||| |    |||||| |||||| |||||    
T  5842446 tcacattagggtttgcatttaaaggaaaaaaagtttccttaaaacca------tcactgtaggagaggtgaatatcatcataaaatggggtgaaggatgg 5842539  T
Q  339 aattataccatgagaagggattttcttcttcatggttgaattccaaaagtttttcacctcattatctgttcttccaggtaagtgcttggcaatctgagcc 438  Q
    ||  ||| ||| |||| ||| ||| ||||| ||| ||||||||||||||||||||||||||||||| |||||||| || |||| ||||||||| || |||    
T  5842540 aacaatatcatcagaaaggagttttttctttatgcttgaattccaaaagtttttcacctcattatcggttcttcctggcaagtacttggcaatttgtgcc 5842639  T
Q  439 cacctgtccaaacaaatttaaatctttttgag 470  Q
    || |||||||||||| |||||| ||| |||||    
T  5842640 catctgtccaaacaagtttaaaccttgttgag 5842671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 142 - 470
Target Start/End: Original strand, 5849059 - 5849381
Alignment:
Q  142 atgtctacctttgtatcaatttggtgaaaattaccttgtagatttggagatgaggttggatagcatagttgatcttcatggtgatggttgaagtttagaa 241  Q
    ||||||||| ||||| || |||||||||||   | ||| | ||||||||| ||| ||| |  | |||| ||||||| ||||||| | ||||||||||| |    
T  5849059 atgtctaccattgtaccagtttggtgaaaa---cattgcatatttggagacgagtttgaaaggtataggtgatcttgatggtgaggattgaagtttagca 5849155  T
Q  242 tcacattagggtttgcatttatagggagtatactttccatagaaccaatatttttattgtagggggtgtgaatattag---aaaatgtggtgaaagatgg 338  Q
    ||||||||||||||||||||| ||| |  | | ||||| || |||||      | | |||||| |  |||||||| |    |||||| |||||| |||||    
T  5849156 tcacattagggtttgcatttaaaggaaaaaaagtttccttaaaacca------tcactgtaggagaggtgaatatcatcataaaatggggtgaaggatgg 5849249  T
Q  339 aattataccatgagaagggattttcttcttcatggttgaattccaaaagtttttcacctcattatctgttcttccaggtaagtgcttggcaatctgagcc 438  Q
    ||  ||| ||| |||| ||| ||| ||||| ||| ||||||||||||||||||||||||||||||| |||||||| || |||||||||| ||| || |||    
T  5849250 aacaatatcatcagaaaggagttttttctttatgcttgaattccaaaagtttttcacctcattatccgttcttcctggcaagtgcttggtaatttgtgcc 5849349  T
Q  439 cacctgtccaaacaaatttaaatctttttgag 470  Q
    || |||||||||||| |||||| ||| |||||    
T  5849350 catctgtccaaacaagtttaaaccttgttgag 5849381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 126 - 201
Target Start/End: Original strand, 5841883 - 5841958
Alignment:
Q  126 ataatggttattgattatgtctacctttgtatcaatttggtgaaaattaccttgtagatttggagatgaggttgga 201  Q
    ||||||||||||||| |||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  5841883 ataatggttattgatcatgtctacatttgtatcaatttggtaaaaatttccttgtagatttggagatgaggttgga 5841958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 126 - 201
Target Start/End: Original strand, 5848593 - 5848668
Alignment:
Q  126 ataatggttattgattatgtctacctttgtatcaatttggtgaaaattaccttgtagatttggagatgaggttgga 201  Q
    ||||||||||||||| |||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  5848593 ataatggttattgatcatgtctacatttgtatcaatttggtaaaaatttccttgtagatttggagatgaggttgga 5848668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 126 - 201
Target Start/End: Original strand, 5886202 - 5886277
Alignment:
Q  126 ataatggttattgattatgtctacctttgtatcaatttggtgaaaattaccttgtagatttggagatgaggttgga 201  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||    
T  5886202 ataatggttattgatcatgtctacctttgtatcaatttggtaaaaatttccttgtagatttagagatgaggttgga 5886277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 488 - 646
Target Start/End: Original strand, 42456825 - 42456983
Alignment:
Q  488 ttgaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcggc 587  Q
    |||||||||| |||  ||||||||||||||||||||| ||||||||||| ||||||| |||| || | |  |||| |   | ||||||||||  |||  |    
T  42456825 ttgaaaattgctgtatacacttctaacaaggctgaaatacatcagaaaaagacgtaattgtccatcgacaattaactaccgtcggttaaaatccatcaac 42456924  T
Q  588 agttaactgctgatgagattatattggtaaagtactggtgtttcctagcattgagtgaa 646  Q
    || ||| | | |||||| ||||||||||||| |||||||||||||||||||| ||||||    
T  42456925 agctaattaccgatgaggttatattggtaaattactggtgtttcctagcattaagtgaa 42456983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 504 - 618
Target Start/End: Complemental strand, 41581189 - 41581075
Alignment:
Q  504 acacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcggcagttaactgctgatga 603  Q
    ||||||| |||||||||||||||||  |||||| |||||||||||| || | | ||||| ||| |  | |||||||  ||||| ||||||||| ||||||    
T  41581189 acacttcaaacaaggctgaaacacactagaaaaagacgtaaatgtccatcgacagttaagtgtcgtagattaaaattcatcggtagttaactgttgatga 41581090  T
Q  604 gattatattggtaaa 618  Q
      |||||||| ||||    
T  41581089 agttatattgataaa 41581075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 5842224 - 5842281
Alignment:
Q  8 tgagatgaagaggtaaacaacccaatgaccatgtatcttcataaggggaaggattaga 65  Q
    |||||| ||||| || |||| |||||||||||||||||||| ||| ||||||||||||    
T  5842224 tgagatcaagagctacacaatccaatgaccatgtatcttcacaagaggaaggattaga 5842281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 5848934 - 5848991
Alignment:
Q  8 tgagatgaagaggtaaacaacccaatgaccatgtatcttcataaggggaaggattaga 65  Q
    |||||| ||||| || |||| |||||||||||||||||||| ||| ||||||||||||    
T  5848934 tgagatcaagagctacacaatccaatgaccatgtatcttcacaagaggaaggattaga 5848991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 5886525 - 5886582
Alignment:
Q  8 tgagatgaagaggtaaacaacccaatgaccatgtatcttcataaggggaaggattaga 65  Q
    |||||| ||||| || |||| |||||||||||||||||||| ||| ||||||||||||    
T  5886525 tgagatcaagagctacacaatccaatgaccatgtatcttcacaagaggaaggattaga 5886582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 599 - 646
Target Start/End: Original strand, 16677124 - 16677171
Alignment:
Q  599 gatgagattatattggtaaagtactggtgtttcctagcattgagtgaa 646  Q
    |||||| |||| | |||||| |||||||||||||||||||||||||||    
T  16677124 gatgaggttatgtaggtaaattactggtgtttcctagcattgagtgaa 16677171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 519 - 610
Target Start/End: Complemental strand, 31645236 - 31645145
Alignment:
Q  519 ctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcggcagttaactgctgatgagattata 610  Q
    |||||||||| |||||||||| ||||||| | || ||| ||||| ||  | ||||||||||  |||||||||||| ||| |||||| |||||    
T  31645236 ctgaaacacaccagaaaatgaagtaaatgaccatcggcagttaactgccgtcggttaaaatccatcggcagttaagtgccgatgaggttata 31645145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 4e-31; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 493 - 646
Target Start/End: Original strand, 5357552 - 5357705
Alignment:
Q  493 aattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcggcagtta 592  Q
    ||||| ||||||||||||||||||||||||||||||  |||||| |||||||||||| || | | ||||| |||||||||||||| |  |||| ||||||    
T  5357552 aattggtgttcacacttctaacaaggctgaaacacactagaaaaagacgtaaatgtccatcgacagttaactgttgccggttaaattccatcgacagtta 5357651  T
Q  593 actgctgatgagattatattggtaaagtactggtgtttcctagcattgagtgaa 646  Q
    ||||| |||||| ||||||||||||| |||| ||||||   | |||||||||||    
T  5357652 actgccgatgaggttatattggtaaattactagtgtttttcaacattgagtgaa 5357705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 360 - 449
Target Start/End: Original strand, 42788746 - 42788835
Alignment:
Q  360 tttcttcttcatggttgaattccaaaagtttttcacctcattatctgttcttccaggtaagtgcttggcaatctgagcccacctgtccaa 449  Q
    ||||||||| ||| |||||||||||||||| ||||||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||    
T  42788746 tttcttctttatgcttgaattccaaaagttcttcacctcattatctgttcttcctggtaaatgctttgctatctgagcccacctgtccaa 42788835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 489 - 646
Target Start/End: Original strand, 27249739 - 27249896
Alignment:
Q  489 tgaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcggca 588  Q
    |||||||||||||  ||||||| ||||||||||||||||| | ||||| || ||||||||| || ||| ||||| ||  ||| ||||||||  |||||      
T  27249739 tgaaaattgttgtatacacttcaaacaaggctgaaacacaccggaaaaagatgtaaatgtccatcggcagttaactgccgcctgttaaaatccatcggtg 27249838  T
Q  589 gttaactgctgatgagattatattggtaaagtactggtgtttcctagcattgagtgaa 646  Q
    |||||||| ||||||  |||||||| |||| |||| |||||||||| |||||||||||    
T  27249839 gttaactgatgatgaagttatattgataaattactagtgtttcctaacattgagtgaa 27249896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 487 - 595
Target Start/End: Complemental strand, 25271904 - 25271796
Alignment:
Q  487 tttgaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcgg 586  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||| |||||| ||| ||||| ||  || | |||||||  |||||    
T  25271904 tttgaaaattgttgtttacacttcaaacaaggctgaaacacatcagaaaaagacgtaaaggtctatcggcggttaactgccgctgtttaaaattcatcgg 25271805  T
Q  587 cagttaact 595  Q
    |||||||||    
T  25271804 cagttaact 25271796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 491 - 630
Target Start/End: Original strand, 29923843 - 29923982
Alignment:
Q  491 aaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcggcagt 590  Q
    |||||||||||  |||| | | | |||||||||||||| ||||||| ||| ||||||| ||| | | ||||| ||  ||||||||||||  ||| ||| |    
T  29923843 aaaattgttgtatacacatgtgataaggctgaaacacaacagaaaaagacataaatgtttatcgacagttaactgccgccggttaaaatccatcagcaat 29923942  T
Q  591 taactgctgatgagattatattggtaaagtactggtgttt 630  Q
    ||||||| |||||| ||||||| ||||| |||||||||||    
T  29923943 taactgccgatgaggttatattagtaaattactggtgttt 29923982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 570 - 646
Target Start/End: Complemental strand, 42013453 - 42013377
Alignment:
Q  570 cggttaaaatatatcggcagttaactgctgatgagattatattggtaaagtactggtgtttcctagcattgagtgaa 646  Q
    |||||||||| ||||| ||||||||||    |||||||| |||| |||| |||||||||||||||||||||||||||    
T  42013453 cggttaaaatttatcgacagttaactgtcattgagattaaattgataaattactggtgtttcctagcattgagtgaa 42013377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 562
Target Start/End: Original strand, 29699507 - 29699579
Alignment:
Q  490 gaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaa 562  Q
    |||||||| | |||| | ||||||||||||||||||||| ||||||| |||||||||||| || ||| |||||    
T  29699507 gaaaattggtattcatatttctaacaaggctgaaacacaccagaaaaagacgtaaatgtccatcggcagttaa 29699579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 600 - 646
Target Start/End: Complemental strand, 12037352 - 12037306
Alignment:
Q  600 atgagattatattggtaaagtactggtgtttcctagcattgagtgaa 646  Q
    ||||| |||||||| |||| |||||||||||||||||||||||||||    
T  12037352 atgaggttatattgataaattactggtgtttcctagcattgagtgaa 12037306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 558 - 630
Target Start/End: Complemental strand, 14389393 - 14389320
Alignment:
Q  558 gttaattgttgccggttaaaa-tatatcggcagttaactgctgatgagattatattggtaaagtactggtgttt 630  Q
    ||||| || |||||||||||| |  |||||||||||||| |||||||| ||||||| ||||| |||||||||||    
T  14389393 gttaactgctgccggttaaaaatcaatcggcagttaactactgatgaggttatattagtaaattactggtgttt 14389320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 586 - 630
Target Start/End: Original strand, 4964140 - 4964184
Alignment:
Q  586 gcagttaactgctgatgagattatattggtaaagtactggtgttt 630  Q
    |||||||||||| |||||||||||||| ||||| |||||||||||    
T  4964140 gcagttaactgccgatgagattatattagtaaattactggtgttt 4964184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 506 - 625
Target Start/End: Original strand, 6069134 - 6069251
Alignment:
Q  506 acttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcggcagttaactgctgatgaga 605  Q
    |||||||| ||||||||||||||  | ||||  | |||||| | ||| ||| |||||||   | ||||||||||  |||||||||||||||  |||||||    
T  6069134 acttctaagaaggctgaaacacacaaaaaaa--atgtaaatttttatcggcagttaattaccgtcggttaaaattcatcggcagttaactgtcgatgaga 6069231  T
Q  606 ttatattggtaaagtactgg 625  Q
    |||||||| |||| ||||||    
T  6069232 ttatattgataaattactgg 6069251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 599 - 646
Target Start/End: Original strand, 29699591 - 29699638
Alignment:
Q  599 gatgagattatattggtaaagtactggtgtttcctagcattgagtgaa 646  Q
    |||||| ||||||||||||| |||| |||||||||| |||||||||||    
T  29699591 gatgaggttatattggtaaattactagtgtttcctaacattgagtgaa 29699638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 487 - 548
Target Start/End: Complemental strand, 3848218 - 3848157
Alignment:
Q  487 tttgaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgt 548  Q
    ||||| ||||||| ||||||||| ||  || ||||||||||||||||||| ||| |||||||    
T  3848218 tttgagaattgttattcacacttttatgaaagctgaaacacatcagaaaaagacataaatgt 3848157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 491 - 536
Target Start/End: Original strand, 11915371 - 11915416
Alignment:
Q  491 aaaattgttgttcacacttctaacaaggctgaaacacatcagaaaa 536  Q
    ||||||| ||| ||||||||||||||| |||||||||| |||||||    
T  11915371 aaaattggtgtacacacttctaacaagactgaaacacaccagaaaa 11915416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 4e-25; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 491 - 646
Target Start/End: Complemental strand, 33629516 - 33629362
Alignment:
Q  491 aaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcggcagt 590  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||  | | ||||| ||    |||  |||||  ||| |||||    
T  33629516 aaaattgttgttcgcacttttaacaaggctgaaacacatcagaaaaagacgtaaatgtctagcgtcagttaactgccatcggcaaaaatcaatcagcagt 33629417  T
Q  591 taactgctgatgagattatattggtaaagtactggtgtttcctagcattgagtgaa 646  Q
    ||| |  ||||||||||||||||||||| ||||  |||||||||||||||||||||    
T  33629416 taa-tattgatgagattatattggtaaattactattgtttcctagcattgagtgaa 33629362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 490 - 549
Target Start/End: Original strand, 2285561 - 2285620
Alignment:
Q  490 gaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtc 549  Q
    |||||||| |||||||||||| ||||||| |||||||||| |||||| ||||||||||||    
T  2285561 gaaaattgctgttcacacttcaaacaaggttgaaacacattagaaaaagacgtaaatgtc 2285620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 489 - 547
Target Start/End: Original strand, 3445346 - 3445404
Alignment:
Q  489 tgaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatg 547  Q
    |||||||||||||||| || || |||||||||||||||||| |||||| ||||||||||    
T  3445346 tgaaaattgttgttcatacctcaaacaaggctgaaacacattagaaaaagacgtaaatg 3445404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 490 - 646
Target Start/End: Complemental strand, 27177118 - 27176962
Alignment:
Q  490 gaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcggcag 589  Q
    |||||||| |||  || |||||||||||  |||||||||| |||||| |||||||||||  || | | ||||| ||  |||| |||||||  ||||  ||    
T  27177118 gaaaattggtgtgtacgcttctaacaagattgaaacacattagaaaaagacgtaaatgttcatcgacagttaactgccgccgattaaaattcatcgatag 27177019  T
Q  590 ttaactgctgatgagattatattggtaaagtactggtgtttcctagcattgagtgaa 646  Q
    |||||||| |||||| |||||||  |||| ||||| |||||  ||| ||||||||||    
T  27177018 ttaactgccgatgaggttatattaataaattactgatgttttttagtattgagtgaa 27176962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 558 - 630
Target Start/End: Original strand, 33929922 - 33929994
Alignment:
Q  558 gttaattgttgccggttaaaatatatcggcagttaactgctgatgagattatattggtaaagtactggtgttt 630  Q
    |||||||  |||||||||||||  |||||||||||||| | ||||||| ||||||| |||| |||||||||||    
T  33929922 gttaattactgccggttaaaatccatcggcagttaactaccgatgagagtatattgataaattactggtgttt 33929994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 490 - 547
Target Start/End: Original strand, 33900099 - 33900156
Alignment:
Q  490 gaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatg 547  Q
    ||||||||||||| ||||||| ||||| || |||||||| ||||||| ||||||||||    
T  33900099 gaaaattgttgtttacacttcaaacaatgccgaaacacaccagaaaaagacgtaaatg 33900156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 487 - 646
Target Start/End: Complemental strand, 21611176 - 21611017
Alignment:
Q  487 tttgaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcgg 586  Q
    ||||||||||| | |||||| ||  |||| ||||||||||||| |||||| |||||||||||  || |   ||||| ||| | ||||||||||  |||||    
T  21611176 tttgaaaattgattttcacattttaaacatggctgaaacacattagaaaaagacgtaaatgttcatcgatagttaactgtcgtcggttaaaattcatcgg 21611077  T
Q  587 cagttaactgctgatgagattatattggtaaagtactggtgtttcctagcattgagtgaa 646  Q
      ||||||| | ||| |  |||||||| |||| |||| || ||| |||| ||||||||||    
T  21611076 ttgttaactaccgataaagttatattgataaattactagtattttctagtattgagtgaa 21611017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 5e-24; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 489 - 646
Target Start/End: Original strand, 2729785 - 2729937
Alignment:
Q  489 tgaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcggca 588  Q
    ||||||||| | |||||||||||||||||||||||||||| ||||||| |||||||||||| || ||| ||||| ||   || ||||||||  ||||  |    
T  2729785 tgaaaattgatattcacacttctaacaaggctgaaacacaacagaaaaagacgtaaatgtccatcggcagttaactgccaccagttaaaatccatcgata 2729884  T
Q  589 gttaactgctgatgagattatattggtaaagtactggtgtttcctagcattgagtgaa 646  Q
    |||||| |  |||||| ||||||||     ||||||||||||||||||||||||||||    
T  2729885 gttaacagtcgatgaggttatattg-----gtactggtgtttcctagcattgagtgaa 2729937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 493 - 548
Target Start/End: Complemental strand, 28443819 - 28443764
Alignment:
Q  493 aattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgt 548  Q
    |||||||||||||||||| |||||||||||||||||  |||||| |||||||||||    
T  28443819 aattgttgttcacacttcaaacaaggctgaaacacactagaaaaagacgtaaatgt 28443764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 558 - 646
Target Start/End: Original strand, 6687755 - 6687844
Alignment:
Q  558 gttaattgttgccggttaaaatat-atcggcagttaactgctgatgagattatattggtaaagtactggtgtttcctagcattgagtgaa 646  Q
    ||||| ||| |||||||||||  | |||||||||||| ||| ||||| ||||||| |||||| | ||||||||||| | |||||||||||    
T  6687755 gttaactgtcgccggttaaaaattcatcggcagttaattgccgatgaaattatataggtaaattgctggtgtttcccatcattgagtgaa 6687844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 491 - 597
Target Start/End: Complemental strand, 7682834 - 7682728
Alignment:
Q  491 aaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcggcagt 590  Q
    ||||||| |||| |||||||||| ||||||||||||||||| |||| ||  ||||| |  |||||  ||||| || |||| ||||||||  |||  ||||    
T  7682834 aaaattgctgtttacacttctaataaggctgaaacacatcaaaaaaagatttaaatattcattggtagttaactgctgccagttaaaatccatcaacagt 7682735  T
Q  591 taactgc 597  Q
    |||||||    
T  7682734 taactgc 7682728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 490 - 646
Target Start/End: Complemental strand, 18489774 - 18489619
Alignment:
Q  490 gaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcggcag 589  Q
    |||||||| |||| ||||||||||||||| ||||| ||| ||||||| ||| |||||||||||   | ||||| ||  | ||||||||||  ||| ||||    
T  18489774 gaaaattgatgttaacacttctaacaaggttgaaatacaccagaaaaagacataaatgtctatca-cagttaactgccgtcggttaaaatccatcagcag 18489676  T
Q  590 ttaactgctgatgagattatattggtaaagtactggtgtttcctagcattgagtgaa 646  Q
    |||||||| ||||| |||||||||||||| |||| ||||||| || |||||||||||    
T  18489675 ttaactgccgatgaaattatattggtaaattactagtgtttcttaacattgagtgaa 18489619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 490 - 646
Target Start/End: Complemental strand, 21512173 - 21512017
Alignment:
Q  490 gaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcggcag 589  Q
    ||||||||||||| ||||||  ||||||| ||||||||| ||||||| |||||||||||| ||  || ||||| ||  ||||||||||||  |||  |||    
T  21512173 gaaaattgttgttgacactttaaacaaggatgaaacacaccagaaaaagacgtaaatgtccatcagcagttaactgcagccggttaaaattgatcaacag 21512074  T
Q  590 ttaactgctgatgagattatattggtaaagtactggtgtttcctagcattgagtgaa 646  Q
    |||||||| ||| |  |||||||| |||| || | ||||||||||||||||||||||    
T  21512073 ttaactgccgataaagttatattgataaattagtagtgtttcctagcattgagtgaa 21512017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 482 - 646
Target Start/End: Complemental strand, 12868594 - 12868429
Alignment:
Q  482 aaacattt-gaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaata 580  Q
    |||||||| ||||||||||||||| ||||||||||| ||| ||||||| ||| |||  ||||| |||| ||| | | ||||| ||| | ||||| ||||     
T  12868594 aaacatttagaaaattgttgttcatacttctaacaaagctaaaacacaccagtaaaacacgtacatgtttatcgacagttaactgtcgtcggtttaaatt 12868495  T
Q  581 tatcggcagttaactgctgatgagattatattggtaaagtactggtgtttcctagcattgagtgaa 646  Q
     ||||| ||||||||| |||||||||||||||| |||| ||||  ||||| ||| |||||||||||    
T  12868494 catcggtagttaactgatgatgagattatattgataaattactaatgttttctaacattgagtgaa 12868429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 489 - 646
Target Start/End: Original strand, 24699347 - 24699504
Alignment:
Q  489 tgaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcggca 588  Q
    |||||||||||||| ||| ||| |||| |||| ||||| | ||||||| |||||||||||| || | | ||||| ||  ||| ||||||||  |||||||    
T  24699347 tgaaaattgttgtttacaattcaaacagggctaaaacataccagaaaaagacgtaaatgtccatcgccagttaactgccgccagttaaaatccatcggca 24699446  T
Q  589 gttaactgctgatgagattatattggtaaagtactggtgtttcctagcattgagtgaa 646  Q
    ||||||| | |||||  |||| ||| |||| |||| ||||||||||| ||||| ||||    
T  24699447 gttaactaccgatgatgttatgttgataaattactagtgtttcctagaattgattgaa 24699504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 490 - 646
Target Start/End: Complemental strand, 9672270 - 9672114
Alignment:
Q  490 gaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcggcag 589  Q
    |||||||| |||||||| ||||||||| ||||||||||||||||||| |||| ||||| | || ||  ||||| ||| | ||||||||||  || | | |    
T  9672270 gaaaattgatgttcacagttctaacaatgctgaaacacatcagaaaaagacgaaaatgcccatcggtagttaactgtcgtcggttaaaatccattgactg 9672171  T
Q  590 ttaactgctgatgagattatattggtaaagtactggtgtttcctagcattgagtgaa 646  Q
    |||||||| |||||  ||||||||| ||| |||   | |||||||||||| ||||||    
T  9672170 ttaactgccgatgaagttatattgggaaattaccaatatttcctagcattaagtgaa 9672114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 489 - 630
Target Start/End: Complemental strand, 45073356 - 45073218
Alignment:
Q  489 tgaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcggca 588  Q
    |||||||||||||  |||| | | | |||| |||||||||  |||||| || ||||||||| || ||| ||||| ||  ||||||||||||  ||||       
T  45073356 tgaaaattgttgtatacacatgtgataaggttgaaacacactagaaaaagatgtaaatgtccatcggcagttaactgccgccggttaaaatccatcg--- 45073260  T
Q  589 gttaactgctgatgagattatattggtaaagtactggtgttt 630  Q
    ||||||||  ||| || ||||||||||||| |||||||||||    
T  45073259 gttaactgtcgataaggttatattggtaaattactggtgttt 45073218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 9e-23; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 491 - 646
Target Start/End: Complemental strand, 54525095 - 54524940
Alignment:
Q  491 aaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcggcagt 590  Q
    |||||| ||||  |||||||||| |||||||||||||| |||||||   ||||||||||||||||| ||||| ||  |||||||||| |  |||  ||||    
T  54525095 aaaattattgtatacacttctaagaaggctgaaacacaccagaaaaaatcgtaaatgtctattggcagttaactgccgccggttaaattccatcaacagt 54524996  T
Q  591 taactgctgatgagattatattggtaaagtactggtgtttcctagcattgagtgaa 646  Q
    ||||||| |||||| ||||||| |||||  ||| || ||||||| |||||||||||    
T  54524995 taactgccgatgaggttatattagtaaataactagtatttcctaacattgagtgaa 54524940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 519 - 646
Target Start/End: Complemental strand, 39028249 - 39028122
Alignment:
Q  519 ctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcggcagttaactgctgatgagattatattggtaaa 618  Q
    |||||||||| ||||||| |||||||||||  || ||| ||||| ||  ||||||||||||  |||| ||||||| ||| ||| || ||||||| |||||    
T  39028249 ctgaaacacaccagaaaaagacgtaaatgttcatcggcagttaactgccgccggttaaaattcatcgacagttaattgccgataaggttatatttgtaaa 39028150  T
Q  619 gtactggtgtttcctagcattgagtgaa 646  Q
     |||| |||||| |||||||||| ||||    
T  39028149 ttactagtgttttctagcattgattgaa 39028122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 573 - 646
Target Start/End: Complemental strand, 48723422 - 48723349
Alignment:
Q  573 ttaaaatatatcggcagttaactgctgatgagattatattggtaaagtactggtgtttcctagcattgagtgaa 646  Q
    ||||||| |||| ||||||| |||| |||||||||||||||||||| |||  ||||||| ||||||||||||||    
T  48723422 ttaaaatgtatcagcagttatctgccgatgagattatattggtaaattaccagtgtttcatagcattgagtgaa 48723349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 487 - 646
Target Start/End: Original strand, 31984362 - 31984519
Alignment:
Q  487 tttgaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcgg 586  Q
    ||||||||||  |||| ||||||| ||||||| ||||| | | |||||||  || |||||||| ||  || ||||| ||  ||||||||||||  |||||    
T  31984362 tttgaaaattactgtttacacttcaaacaaggttgaaatataccagaaaaa-acataaatgtccatcagcagttaactgccgccggttaaaattcatcgg 31984460  T
Q  587 cagttaactgctgatgagattatattggtaaagtactggtgtttcctagcattgagtgaa 646  Q
    | |||||||||  ||||  ||||||| ||||| || ||||||||||||||||||||||||    
T  31984461 cggttaactgcctatgatgttatatttgtaaatta-tggtgtttcctagcattgagtgaa 31984519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 490 - 646
Target Start/End: Complemental strand, 51381110 - 51380958
Alignment:
Q  490 gaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcggcag 589  Q
    ||||||||  ||| ||||||| ||||||||||||||||| ||||||| |||||||| | | ||     ||||| ||  ||| ||||||||  |||| | |    
T  51381110 gaaaattgccgtttacacttcaaacaaggctgaaacacaccagaaaaagacgtaaacgcccat----agttaactgccgccagttaaaatccatcgactg 51381015  T
Q  590 ttaactgctgatgagattatattggtaaagtactggtgtttcctagcattgagtgaa 646  Q
    |||||| | |||||  |||||||| |||| |||| ||||||||||||||||||||||    
T  51381014 ttaactaccgatgatgttatattgataaattactagtgtttcctagcattgagtgaa 51380958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 490 - 646
Target Start/End: Complemental strand, 10315869 - 10315713
Alignment:
Q  490 gaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcggcag 589  Q
    |||||||| |||  ||||||| |  |||||||||  | ||||||||| |||||||||| | || ||| ||||||||  ||  |||||||| |||||||||    
T  10315869 gaaaattgctgtagacacttcaactaaggctgaattatatcagaaaaagacgtaaatgcccatcggcagttaattgccgcgtgttaaaatttatcggcag 10315770  T
Q  590 ttaactgctgatgagattatattggtaaagtactggtgtttcctagcattgagtgaa 646  Q
    |||||||| |||||| ||||||| ||||| || |||||||||  |||||||||||||    
T  10315769 ttaactgccgatgaggttatattagtaaattattggtgtttctcagcattgagtgaa 10315713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 605 - 646
Target Start/End: Original strand, 37283756 - 37283797
Alignment:
Q  605 attatattggtaaagtactggtgtttcctagcattgagtgaa 646  Q
    ||||||||| |||| |||| ||||||||||||||||||||||    
T  37283756 attatattgataaattactcgtgtttcctagcattgagtgaa 37283797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 498 - 646
Target Start/End: Original strand, 68900 - 69046
Alignment:
Q  498 ttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgtctattggccgttaattgttgccggttaaaatatatcggcagttaactgc 597  Q
    |||||||||||||||||||  ||||||||||  |||||| ||||||||||||||| | | ||||| ||| | ||||||||||  |||  || |||||| |    
T  68900 ttgttcacacttctaacaaaactgaaacacactagaaaa-gacgtaaatgtctatcgacagttaactgtcgtcggttaaaattcatca-cacttaactac 68997  T
Q  598 tgatgagattatattggtaaagtactggtgtttcctagcattgagtgaa 646  Q
     |||||  |||||||| |||| |||| |||| |||||||||||||||||    
T  68998 cgatgatgttatattgataaattactagtgtgtcctagcattgagtgaa 69046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 582 - 646
Target Start/End: Complemental strand, 22023200 - 22023136
Alignment:
Q  582 atcggcagttaactgctgatgagattatattggtaaagtactggtgtttcctagcattgagtgaa 646  Q
    |||||||||||||||| |||||| |||||| |||||| ||||||||||| | |||||||||||||    
T  22023200 atcggcagttaactgccgatgaggttatataggtaaattactggtgttttccagcattgagtgaa 22023136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 490 - 548
Target Start/End: Complemental strand, 28108244 - 28108185
Alignment:
Q  490 gaaaattgttgttcacacttctaacaaggctgaaacacatcag-aaaatgacgtaaatgt 548  Q
    ||||||||||||||||||||||||||||||||||||| | ||| |||| |||||||||||    
T  28108244 gaaaattgttgttcacacttctaacaaggctgaaacaaaccagaaaaaagacgtaaatgt 28108185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 489 - 548
Target Start/End: Original strand, 36979733 - 36979792
Alignment:
Q  489 tgaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgt 548  Q
    ||||||||||| ||||| |||||||||| ||||||||||| ||||||| |||||||||||    
T  36979733 tgaaaattgtttttcacgcttctaacaaagctgaaacacaccagaaaaagacgtaaatgt 36979792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 491 - 548
Target Start/End: Original strand, 25992971 - 25993028
Alignment:
Q  491 aaaattgttgttcacacttctaacaaggctgaaacacatcagaaaatgacgtaaatgt 548  Q
    ||||||| |||||||||||| |||||| |||||| ||||||||||| |||||||||||    
T  25992971 aaaattgatgttcacacttcaaacaagtctgaaatacatcagaaaaagacgtaaatgt 25993028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 570 - 613
Target Start/End: Original strand, 33150390 - 33150433
Alignment:
Q  570 cggttaaaatatatcggcagttaactgctgatgagattatattg 613  Q
    |||||||||||||| |||||||||||||||||||| ||||||||    
T  33150390 cggttaaaatatattggcagttaactgctgatgaggttatattg 33150433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 571 - 646
Target Start/End: Complemental strand, 46878237 - 46878162
Alignment:
Q  571 ggttaaaatatatcggcagttaactgctgatgagattatattggtaaagtactggtgtttcctagcattgagtgaa 646  Q
    |||||||||  ||||  |||||||||| ||| ||||||||||  |||| || ||||||||||||||||||||||||    
T  46878237 ggttaaaattcatcgatagttaactgccgataagattatatttataaattattggtgtttcctagcattgagtgaa 46878162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 490 - 648
Target Start/End: Original strand, 46915909 - 46916067
Alignment:
Q  490 gaaaattgttgttcacacttctaacaaggctgaaacacatcagaaaat-gacgtaaatgtctattggccgttaattgttgccggttaaaatatatcggca 588  Q
    ||||||||||||  | ||||| |  |||||||||||||| || ||||  |||||||||||  || | | ||||| ||||  || || ||||  ||| |||    
T  46915909 gaaaattgttgtatatacttcaactaaggctgaaacacaccaaaaaaaagacgtaaatgttcatcgacagttaactgttttcgattgaaatccatctgca 46916008  T
Q  589 gttaactgctgatgagattatattggtaaagtactggtgtttcctagcattgagtgaaat 648  Q
    ||||||||| ||||| || ||||||||||| ||||||||||||||| ||| |||||||||    
T  46916009 gttaactgccgatgaaat-atattggtaaattactggtgtttcctatcatcgagtgaaat 46916067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 360 - 444
Target Start/End: Complemental strand, 51044748 - 51044664
Alignment:
Q  360 tttcttcttcatggttgaattccaaaagtttttcacctcattatctgttcttccaggtaagtgcttggcaatctgagcccacctg 444  Q
    |||||||||||   ||||||||||||||||||| | ||||||||||||||| || ||||| ||    ||||| ||||||||||||    
T  51044748 tttcttcttcaaacttgaattccaaaagttttttatctcattatctgttctccctggtaattgtgatgcaatttgagcccacctg 51044664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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