View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13692_high_13 (Length: 316)

Name: NF13692_high_13
Description: NF13692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13692_high_13
NF13692_high_13
[»] chr3 (8 HSPs)
chr3 (1-101)||(46692045-46692145)
chr3 (1-90)||(42530736-42530824)
chr3 (17-90)||(46691967-46692041)
chr3 (3-120)||(50295558-50295677)
chr3 (74-120)||(42530737-42530783)
chr3 (73-162)||(50295546-50295636)
chr3 (61-120)||(46692075-46692133)
chr3 (38-121)||(50295526-50295610)
[»] chr2 (12 HSPs)
chr2 (1-90)||(1173283-1173372)
chr2 (4-90)||(1173379-1173465)
chr2 (1-166)||(1173469-1173635)
chr2 (1-146)||(38584083-38584234)
chr2 (43-187)||(1173541-1173687)
chr2 (31-116)||(1173560-1173646)
chr2 (74-116)||(8986221-8986263)
chr2 (1-116)||(8986190-8986306)
chr2 (68-120)||(1173413-1173464)
chr2 (61-120)||(1173313-1173371)
chr2 (87-117)||(32290651-32290681)
chr2 (24-97)||(38584168-38584246)
[»] chr6 (17 HSPs)
chr6 (1-90)||(21862241-21862331)
chr6 (12-90)||(21862144-21862222)
chr6 (1-90)||(28063529-28063618)
chr6 (1-146)||(28063622-28063771)
chr6 (1-90)||(13167485-13167575)
chr6 (3-97)||(21862044-21862137)
chr6 (63-120)||(21862145-21862201)
chr6 (61-120)||(21862242-21862300)
chr6 (13-116)||(13167368-13167470)
chr6 (77-120)||(28063575-28063617)
chr6 (22-60)||(10741529-10741567)
chr6 (74-116)||(21862056-21862098)
chr6 (84-146)||(21862246-21862308)
chr6 (57-90)||(13167579-13167612)
chr6 (51-122)||(13097901-13097973)
chr6 (110-181)||(13097903-13097975)
chr6 (94-146)||(21862149-21862201)
[»] chr7 (18 HSPs)
chr7 (1-90)||(15623085-15623174)
chr7 (1-90)||(44338471-44338560)
chr7 (1-116)||(21813824-21813940)
chr7 (11-90)||(15623188-15623267)
chr7 (22-90)||(15623013-15623081)
chr7 (1-90)||(44338287-44338375)
chr7 (1-90)||(44338379-44338467)
chr7 (74-120)||(44338380-44338426)
chr7 (17-131)||(11828572-11828688)
chr7 (73-162)||(11828598-11828688)
chr7 (75-148)||(21813822-21813896)
chr7 (74-116)||(44338292-44338334)
chr7 (74-116)||(46963840-46963882)
chr7 (8-116)||(46963805-46963913)
chr7 (72-120)||(15623033-15623080)
chr7 (73-120)||(15623127-15623173)
chr7 (73-120)||(15623220-15623266)
chr7 (73-120)||(44338472-44338518)
[»] chr5 (14 HSPs)
chr5 (1-90)||(24137046-24137135)
chr5 (1-116)||(9511782-9511898)
chr5 (1-116)||(11335371-11335485)
chr5 (73-147)||(9511781-9511856)
chr5 (1-90)||(24136891-24136980)
chr5 (23-90)||(9511777-9511845)
chr5 (61-120)||(24136892-24136951)
chr5 (104-183)||(9511776-9511856)
chr5 (9-61)||(24136983-24137035)
chr5 (73-120)||(24137047-24137093)
chr5 (74-116)||(24136813-24136855)
chr5 (84-146)||(24137051-24137113)
chr5 (61-90)||(24136984-24137013)
chr5 (84-120)||(24136985-24137021)
[»] chr4 (13 HSPs)
chr4 (1-116)||(54147687-54147802)
chr4 (1-90)||(16870748-16870837)
chr4 (1-59)||(54147869-54147926)
chr4 (24-120)||(42265397-42265492)
chr4 (74-116)||(16870659-16870701)
chr4 (73-162)||(54147671-54147761)
chr4 (13-116)||(16870628-16870731)
chr4 (210-258)||(54147499-54147547)
chr4 (23-121)||(54147651-54147750)
chr4 (1-55)||(54147811-54147864)
chr4 (110-146)||(24225514-24225551)
chr4 (23-90)||(42265396-42265462)
chr4 (84-120)||(54147869-54147905)
[»] chr8 (10 HSPs)
chr8 (1-90)||(20242148-20242237)
chr8 (1-90)||(20241964-20242052)
chr8 (1-90)||(20242056-20242144)
chr8 (1-90)||(20250923-20251011)
chr8 (1-90)||(20251015-20251103)
chr8 (74-120)||(20242057-20242103)
chr8 (74-120)||(20250964-20251010)
chr8 (74-116)||(20241969-20242011)
chr8 (74-116)||(20251056-20251098)
chr8 (73-120)||(20242149-20242195)
[»] chr1 (10 HSPs)
chr1 (13-90)||(15629942-15630019)
chr1 (1-85)||(15630023-15630107)
chr1 (61-116)||(15630052-15630107)
chr1 (54-120)||(19825087-19825153)
chr1 (84-147)||(15630044-15630108)
chr1 (28-97)||(19825091-19825161)
chr1 (73-116)||(2072389-2072432)
chr1 (73-120)||(2075919-2075966)
chr1 (23-61)||(19825117-19825155)
chr1 (84-120)||(15629952-15629988)
[»] scaffold0499 (1 HSPs)
scaffold0499 (23-122)||(7238-7335)


Alignment Details
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 46692045 - 46692145
Alignment:
Q  1 aagaatcaaaagggggagaaaaaaccaaattgtgagcactcgactcacctaacaaccaaatgtgagaactagactcaccaaacaaccaaagtgtgagaac 100  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||| |||||||||    
T  46692045 aagaatcaaaagggagagaagaaaccaaattgtgagcactcgactcaccaaacaactaaatgtgagaattagactcaccaaacaaccaaattgtgagaac 46692144  T
Q  101 t 101  Q
    |    
T  46692145 t 46692145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 42530824 - 42530736
Alignment:
Q  1 aagaatcaaaagggggagaaaaaaccaaattgtgagcactcgactcacctaacaaccaaa-tgtgagaactagactcaccaaacaaccaaa 90  Q
    ||||||||||||||| |||| |||||||||||||||||| || |||||| |||||||||| |||||||||| |||||||||||||||||||    
T  42530824 aagaatcaaaagggg-agaagaaaccaaattgtgagcacacg-ctcaccaaacaaccaaagtgtgagaactcgactcaccaaacaaccaaa 42530736  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 46691967 - 46692041
Alignment:
Q  17 agaaaaaaccaaattgtgagcactcgactcacctaa-caaccaaatgtgagaactagactcaccaaacaaccaaa 90  Q
    |||| |||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||| ||||||    
T  46691967 agaagaaaccaaattgtgaacactcgactcaccaaaacaaccaaatgtgagaactagactcaccaaaccaccaaa 46692041  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 120
Target Start/End: Complemental strand, 50295677 - 50295558
Alignment:
Q  3 gaatcaaaaggggg-agaaaaaaccaaattgtgagcactcgactcacctaacaaccaaa-tgtgagaactagactcaccaaacaaccaaagtgtgagaac 100  Q
    |||||||||||||| |||| |||||||||| |||| |||  ||||||| ||||| |||| |  |||||||  ||||||||||||||| ||||||||| ||    
T  50295677 gaatcaaaaggggggagaagaaaccaaattatgagtacttaactcaccaaacaatcaaagtacgagaactcaactcaccaaacaacccaagtgtgagcac 50295578  T
Q  101 tcgactcaccaaacaaccaa 120  Q
    ||||||||| ||||||||||    
T  50295577 tcgactcacgaaacaaccaa 50295558  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 74 - 120
Target Start/End: Complemental strand, 42530783 - 42530737
Alignment:
Q  74 ctcaccaaacaaccaaagtgtgagaactcgactcaccaaacaaccaa 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  42530783 ctcaccaaacaaccaaagtgtgagaactcgactcaccaaacaaccaa 42530737  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 73 - 162
Target Start/End: Complemental strand, 50295636 - 50295546
Alignment:
Q  73 actcaccaaacaaccaaagtgtgagaactcgactcaccaaacaacc-aattgtaagcactcgattcaccaaacaaatcaattgtgagcact 162  Q
    ||||||||||||| ||||||  |||||||| ||||||||||||||| || ||| ||||||||| |||| ||||||   |||||||||||||    
T  50295636 actcaccaaacaatcaaagtacgagaactcaactcaccaaacaacccaagtgtgagcactcgactcacgaaacaaccaaattgtgagcact 50295546  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 46692075 - 46692133
Alignment:
Q  61 tgtgagaactagactcaccaaacaaccaaagtgtgagaactcgactcaccaaacaaccaa 120  Q
    |||||| ||| ||||||||||||||| ||| |||||||| | ||||||||||||||||||    
T  46692075 tgtgagcactcgactcaccaaacaactaaa-tgtgagaattagactcaccaaacaaccaa 46692133  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 121
Target Start/End: Complemental strand, 50295610 - 50295526
Alignment:
Q  38 actcgactcacctaacaaccaaa-tgtgagaactagactcaccaaacaaccaaagtgtgagaactcgactcaccaaacaaccaat 121  Q
    |||| ||||||| ||||||| || |||||| ||| ||||||| ||||||||||| |||||| ||| ||| ||| |||||| ||||    
T  50295610 actcaactcaccaaacaacccaagtgtgagcactcgactcacgaaacaaccaaattgtgagcacttgacccactaaacaaacaat 50295526  T

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Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 1173283 - 1173372
Alignment:
Q  1 aagaatcaaaagggggagaaaaaaccaaattgtgagcactcgactcacctaacaaccaaatgtgagaactagactcaccaaacaaccaaa 90  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||    
T  1173283 aagaatcaaaagggggagaagaaaccaaattgtgagcactcgactcactaaacaatcaaatgtgagaactagactcaccaaacaaccaaa 1173372  T

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Target: chr2; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 1173379 - 1173465
Alignment:
Q  4 aatcaaaagggggagaaaaaaccaaattgtgagcactcgactcacctaacaaccaaatgtgagaactagactcaccaaacaaccaaa 90  Q
    ||||||||||||||||| ||||||||||||| ||||| |||||||| |||||||||||||||||| |||||||||||||||||||||    
T  1173379 aatcaaaagggggagaagaaaccaaattgtgtgcactagactcaccaaacaaccaaatgtgagaattagactcaccaaacaaccaaa 1173465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 1173469 - 1173635
Alignment:
Q  1 aagaatcaaaagggggagaaaaaaccaaattgtgagcactcgactcacctaacaaccaaa-tgtgagaactagactcaccaaacaaccaaagtgtgagaa 99  Q
    |||||||||||||| ||||| ||||||||||||||||||| |||||||| |||||||||| ||||||  ||  ||||||||||||| |||  |||||| |    
T  1173469 aagaatcaaaagggcgagaagaaaccaaattgtgagcactagactcaccaaacaaccaaagtgtgagcgct-tactcaccaaacaaacaacatgtgagca 1173567  T
Q  100 ctcgactcaccaaacaacc-aattgtaagcactcgattcaccaaacaaatcaattgtgagcactcgac 166  Q
    || |||||||||||||||| || | | || |||||| ||||||||||||  |||| ||||||||||||    
T  1173568 ctagactcaccaaacaaccaaaatatgagtactcgactcaccaaacaaacaaattatgagcactcgac 1173635  T

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Target: chr2; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 38584083 - 38584234
Alignment:
Q  1 aagaatcaaaagggggagaaaaaaccaaattgtgagcactcgactcacctaacaaccaaa-tgtgagaactagactcaccaaacaaccaaagtgtgagaa 99  Q
    |||||||||||||||||||||||| ||||||||||||| |  ||||||| |||||||||| |||||| |||  ||||||||||| |||||| |||||| |    
T  38584083 aagaatcaaaagggggagaaaaaatcaaattgtgagcatttaactcaccaaacaaccaaattgtgagcacttaactcaccaaactaccaaattgtgagca 38584182  T
Q  100 ctcgactc----accaaacaacc-aattgtaagcactcgattcaccaaacaa 146  Q
    || |||||    ||||||||||| || ||| ||||||||| |||||||||||    
T  38584183 cttgactcaccaaccaaacaaccaaaatgtgagcactcgactcaccaaacaa 38584234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 43 - 187
Target Start/End: Original strand, 1173541 - 1173687
Alignment:
Q  43 actcacctaacaaccaa-atgtgagaactagactcaccaaacaaccaaagtgtgagaactcgactcaccaaacaaccaa-ttgtaagcactcgattcacc 140  Q
    ||||||| ||||| ||| ||||||| ||||||||||||||||||||||| | |||| |||||||||||||||||| ||| || | |||||||||  ||||    
T  1173541 actcaccaaacaaacaacatgtgagcactagactcaccaaacaaccaaaatatgagtactcgactcaccaaacaaacaaattatgagcactcgacccacc 1173640  T
Q  141 aaacaaatcaattgtgagcactcgacttatcaaacaaccaaacaaac 187  Q
    |||||||  |||| |||||||| |||  | ||||||| |||||||||    
T  1173641 aaacaaacaaattatgagcacttgacccaccaaacaaacaaacaaac 1173687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 31 - 116
Target Start/End: Original strand, 1173560 - 1173646
Alignment:
Q  31 tgtgagcactcgactcacctaacaaccaaa-tgtgagaactagactcaccaaacaaccaaagtgtgagaactcgactcaccaaacaa 116  Q
    |||||||||| |||||||| |||||||||| | |||| ||| |||||||||||||| |||| | |||| ||||||| ||||||||||    
T  1173560 tgtgagcactagactcaccaaacaaccaaaatatgagtactcgactcaccaaacaaacaaattatgagcactcgacccaccaaacaa 1173646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 74 - 116
Target Start/End: Complemental strand, 8986263 - 8986221
Alignment:
Q  74 ctcaccaaacaaccaaagtgtgagaactcgactcaccaaacaa 116  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  8986263 ctcaccaaacaaccaaagtgtgagaaatcgactcaccaaacaa 8986221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 8986306 - 8986190
Alignment:
Q  1 aagaatcaaaagggggagaaa-aaaccaaattgtgagcactcgactcacctaacaaccaaa-tgtgagaactagactcaccaaacaaccaaagtgtgaga 98  Q
    |||||| |||| ||||||||| ||||||||||||||||||  | |||||| |||||||||| |||||||| | |||||||||||||| |||| | ||||     
T  8986306 aagaataaaaaaggggagaaagaaaccaaattgtgagcacatg-ctcaccaaacaaccaaagtgtgagaaatcgactcaccaaacaagcaaattatgagt 8986208  T
Q  99 actcgactcaccaaacaa 116  Q
     || ||| ||||||||||    
T  8986207 tcttgacccaccaaacaa 8986190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 1173413 - 1173464
Alignment:
Q  68 actagactcaccaaacaaccaaagtgtgagaactcgactcaccaaacaaccaa 120  Q
    ||||||||||||||||||||||| |||||||| | ||||||||||||||||||    
T  1173413 actagactcaccaaacaaccaaa-tgtgagaattagactcaccaaacaaccaa 1173464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 1173313 - 1173371
Alignment:
Q  61 tgtgagaactagactcaccaaacaaccaaagtgtgagaactcgactcaccaaacaaccaa 120  Q
    |||||| ||| ||||||| |||||| |||| |||||||||| ||||||||||||||||||    
T  1173313 tgtgagcactcgactcactaaacaatcaaa-tgtgagaactagactcaccaaacaaccaa 1173371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 117
Target Start/End: Complemental strand, 32290681 - 32290651
Alignment:
Q  87 caaagtgtgagaactcgactcaccaaacaac 117  Q
    |||||||||||||||||||||||||||||||    
T  32290681 caaagtgtgagaactcgactcaccaaacaac 32290651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 38584168 - 38584246
Alignment:
Q  24 accaaattgtgagcactcgactcaccta----acaaccaaa-tgtgagaactagactcaccaaacaaccaaagtgtgag 97  Q
    ||||||||||||||||| |||||||| |    ||||||||| |||||| ||| |||||||||||||| |||| ||||||    
T  38584168 accaaattgtgagcacttgactcaccaaccaaacaaccaaaatgtgagcactcgactcaccaaacaagcaaattgtgag 38584246  T

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Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 21862331 - 21862241
Alignment:
Q  1 aagaatcaaaa-gggggagaaaaaaccaaattgtgagcactcgactcacctaacaaccaaatgtgagaactagactcaccaaacaaccaaa 90  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  21862331 aagaatcaaaatgggggagaagaaaccaaattgtgagcactcgactcaccaaacaaccaaatgtgagagctagactcaccaaacaaccaaa 21862241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 21862222 - 21862144
Alignment:
Q  12 gggggagaaaaaaccaaattgtgagcactcgactcacctaacaaccaaatgtgagaactagactcaccaaacaaccaaa 90  Q
    ||||||||  |||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21862222 gggggagaggaaaccaaatattgagcactcgactcaccaaacaaccaaatgtgagaactagactcaccaaacaaccaaa 21862144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 28063529 - 28063618
Alignment:
Q  1 aagaatcaaaagggggagaaaaaaccaaattgtgagcactcgactcacctaacaaccaaatgtgagaactagactcaccaaacaaccaaa 90  Q
    |||||||||||||||| ||| ||| ||||||| ||| | || ||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  28063529 aagaatcaaaagggggtgaagaaatcaaattgggagaattcaacttaccaaacaaccaaatgtgagaactagactcaccaaacaaccaaa 28063618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 28063622 - 28063771
Alignment:
Q  1 aagaatcaaaagggggagaaaaaaccaaattgtgagcactcgactcacctaacaaccaaatgtgagaactag-------actcaccaaacaaccaaagtg 93  Q
    ||||||||||||||  |||| ||||||||||||||||||  |||||||| ||||||||| |||||| ||| |       ||||||||||||| | || ||    
T  28063622 aagaatcaaaaggg--agaagaaaccaaattgtgagcacctgactcaccaaacaaccaattgtgagcactcggctcaccactcaccaaacaaactaattg 28063719  T
Q  94 tgagaactcgactcaccaaacaaccaattgtaagcactcgattcaccaaacaa 146  Q
    |||| |||| ||||| ||||||||||||||| |||| |||| ||| |||||||    
T  28063720 tgagcactc-actcatcaaacaaccaattgtgagcaatcgactcaacaaacaa 28063771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 13167575 - 13167485
Alignment:
Q  1 aagaatcaaaagggggagaaaaaaccaaattgtgagcactcgactcacc-taacaaccaaatgtgagaactagactcaccaaacaaccaaa 90  Q
    |||||||| ||||||||||| |||||||| |||||||||||||||||||  |||||  ||||||||||| |  |||||||| |||||||||    
T  13167575 aagaatcagaagggggagaagaaaccaaactgtgagcactcgactcaccggaacaatgaaatgtgagaattttactcaccacacaaccaaa 13167485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 97
Target Start/End: Complemental strand, 21862137 - 21862044
Alignment:
Q  3 gaatcaaaagggggagaaaaaaccaaattgtgagcactcgactcacctaacaaccaaa-tgtgagaactagactcaccaaacaaccaaagtgtgag 97  Q
    ||||||||||||| |||| |||||||||||||||||| || |||| | |||||||||| |||||||| | |||||||||||||| |||| ||||||    
T  21862137 gaatcaaaagggg-agaagaaaccaaattgtgagcacacg-ctcaacaaacaaccaaaatgtgagaattcgactcaccaaacaagcaaattgtgag 21862044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 21862201 - 21862145
Alignment:
Q  63 tgagaactagactcaccaaacaaccaaagtgtgagaactcgactcaccaaacaaccaa 120  Q
    |||| ||| ||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  21862201 tgagcactcgactcaccaaacaaccaaa-tgtgagaactagactcaccaaacaaccaa 21862145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 120
Target Start/End: Complemental strand, 21862300 - 21862242
Alignment:
Q  61 tgtgagaactagactcaccaaacaaccaaagtgtgagaactcgactcaccaaacaaccaa 120  Q
    |||||| ||| ||||||||||||||||||| ||||||| || ||||||||||||||||||    
T  21862300 tgtgagcactcgactcaccaaacaaccaaa-tgtgagagctagactcaccaaacaaccaa 21862242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 13167470 - 13167368
Alignment:
Q  13 ggggagaaaaaaccaaattgtgagcactcgactcacctaacaaccaaatgtgagaactagactcaccaaacaaccaaagtgtgagaactcgactcaccaa 112  Q
    |||||||| | |||||||||||||||  || |||| | |||||| || |||||||| | |||||||||||||| |||| || ||| ||| ||| ||||||    
T  13167470 ggggagaagacaccaaattgtgagcatacg-ctcagcaaacaacaaagtgtgagaattcgactcaccaaacaagcaaattgcgagcacttgacccaccaa 13167372  T
Q  113 acaa 116  Q
    ||||    
T  13167371 acaa 13167368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 120
Target Start/End: Original strand, 28063575 - 28063617
Alignment:
Q  77 accaaacaaccaaagtgtgagaactcgactcaccaaacaaccaa 120  Q
    |||||||||||||| |||||||||| ||||||||||||||||||    
T  28063575 accaaacaaccaaa-tgtgagaactagactcaccaaacaaccaa 28063617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 10741567 - 10741529
Alignment:
Q  22 aaaccaaattgtgagcactcgactcacctaacaaccaaa 60  Q
    ||||||||||||||| |||||||||||| ||||||||||    
T  10741567 aaaccaaattgtgagtactcgactcaccgaacaaccaaa 10741529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 116
Target Start/End: Complemental strand, 21862098 - 21862056
Alignment:
Q  74 ctcaccaaacaaccaaagtgtgagaactcgactcaccaaacaa 116  Q
    |||| |||||||||||| |||||||| ||||||||||||||||    
T  21862098 ctcaacaaacaaccaaaatgtgagaattcgactcaccaaacaa 21862056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 146
Target Start/End: Complemental strand, 21862308 - 21862246
Alignment:
Q  84 aaccaaagtgtgagaactcgactcaccaaacaaccaattgtaagcactcgattcaccaaacaa 146  Q
    ||||||| |||||| |||||||||||||||||||||| ||| ||  || || |||||||||||    
T  21862308 aaccaaattgtgagcactcgactcaccaaacaaccaaatgtgagagctagactcaccaaacaa 21862246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 90
Target Start/End: Complemental strand, 13167612 - 13167579
Alignment:
Q  57 caaatgtgagaactagactcaccaaacaaccaaa 90  Q
    ||||||| ||||||||||||||||||||||||||    
T  13167612 caaatgtaagaactagactcaccaaacaaccaaa 13167579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 122
Target Start/End: Complemental strand, 13097973 - 13097901
Alignment:
Q  51 aacaaccaaat-gtgagaactagactcaccaaacaaccaaagtgtgagaactcgactcaccaaacaaccaatt 122  Q
    ||||||||||| ||||| ||| | |||| ||||||| |||  |||||| |||||||||| |||||||||||||    
T  13097973 aacaaccaaattgtgagcacttgtctcaacaaacaaacaatttgtgagcactcgactcatcaaacaaccaatt 13097901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 181
Target Start/End: Complemental strand, 13097975 - 13097903
Alignment:
Q  110 caaacaaccaa-ttgtaagcactcgattcaccaaacaaatcaattgtgagcactcgacttatcaaacaaccaa 181  Q
    ||||||||||| |||| |||||| |  ||| ||||||||  | |||||||||||||||| |||||||||||||    
T  13097975 caaacaaccaaattgtgagcacttgtctcaacaaacaaacaatttgtgagcactcgactcatcaaacaaccaa 13097903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 21862201 - 21862149
Alignment:
Q  94 tgagaactcgactcaccaaacaaccaattgtaagcactcgattcaccaaacaa 146  Q
    |||| |||||||||||||||||||||| ||| || ||| || |||||||||||    
T  21862201 tgagcactcgactcaccaaacaaccaaatgtgagaactagactcaccaaacaa 21862149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 15623085 - 15623174
Alignment:
Q  1 aagaatcaaaagggggagaaaaaaccaaattgtgagcactcgactcacctaacaaccaaatgtgagaactagactcaccaaacaaccaaa 90  Q
    ||||||||  |||||||||| |||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  15623085 aagaatcagtagggggagaagaaacaaaattgtgagcactcaactcaccaaacaaccaaatgtgagaactagactcaccaaacaaccaaa 15623174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 44338560 - 44338471
Alignment:
Q  1 aagaatcaaaagggggagaaaaaaccaaattgtgagcactcgactcacctaacaaccaaatgtgagaactagactcaccaaacaaccaaa 90  Q
    |||||||||||||||||||| |||||||||||||||||| | |||||||  |||||||||||||||||||  ||||||||||||||||||    
T  44338560 aagaatcaaaagggggagaagaaaccaaattgtgagcacactactcaccagacaaccaaatgtgagaactctactcaccaaacaaccaaa 44338471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 21813940 - 21813824
Alignment:
Q  1 aagaatcaaaagggggagaaaaaaccaaattgtgagcactcgactcacctaacaaccaaat-gtgagaactagactcaccaaacaaccaaagtgtgagaa 99  Q
    |||||||||||||||||||||||||||||||||| | |||    ||||| | ||||||||| ||||| ||| |||||||||||||||||||||||||| |    
T  21813940 aagaatcaaaagggggagaaaaaaccaaattgtgggtacttatttcaccaagcaaccaaattgtgagcactcgactcaccaaacaaccaaagtgtgagca 21813841  T
Q  100 ctcgactcaccaaacaa 116  Q
    || ||||||||||||||    
T  21813840 cttgactcaccaaacaa 21813824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 90
Target Start/End: Original strand, 15623188 - 15623267
Alignment:
Q  11 agggggagaaaaaaccaaattgtgagcactcgactcacctaacaaccaaatgtgagaactagactcaccaaacaaccaaa 90  Q
    |||||||||| |||| ||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  15623188 agggggagaagaaacaaaattgtgagcactcaactcaccaaacaatcaaatgtgagaactagactcaccaaacaaccaaa 15623267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 15623013 - 15623081
Alignment:
Q  22 aaaccaaattgtgagcactcgactcacctaacaaccaaatgtgagaactagactcaccaaacaaccaaa 90  Q
    ||||| ||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  15623013 aaaccgaatcgtgagcacacgactcaccaaacaaccaaatgtgagaactagactcaccaaacaaccaaa 15623081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 44338375 - 44338287
Alignment:
Q  1 aagaatcaaaagggggagaaaaaaccaaattgtgagcactcgactcacctaacaaccaaa-tgtgagaactagactcaccaaacaaccaaa 90  Q
    ||||||||||||||| |||| |||||||||||||||||| || |||||| |||||||||| |||||||||| |||||||||||||| ||||    
T  44338375 aagaatcaaaagggg-agaagaaaccaaattgtgagcacacg-ctcaccaaacaaccaaaatgtgagaactcgactcaccaaacaagcaaa 44338287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 44338467 - 44338379
Alignment:
Q  1 aagaatcaaaagggggagaaaaaaccaaattgtgagcactcgactcacctaacaaccaaa-tgtgagaactagactcaccaaacaaccaaa 90  Q
    ||||||||||||||| |||| |||||||||||||||||| || |||||| |||||||||| |||||||||| |||||||||||| ||||||    
T  44338467 aagaatcaaaagggg-agaagaaaccaaattgtgagcacacg-ctcaccaaacaaccaaagtgtgagaactcgactcaccaaaccaccaaa 44338379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 120
Target Start/End: Complemental strand, 44338426 - 44338380
Alignment:
Q  74 ctcaccaaacaaccaaagtgtgagaactcgactcaccaaacaaccaa 120  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||    
T  44338426 ctcaccaaacaaccaaagtgtgagaactcgactcaccaaaccaccaa 44338380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 11828572 - 11828688
Alignment:
Q  17 agaaaaaaccaaattgtgagcactcgactcacctaacaacc-aaatgtgagaactagactcaccaaacaaccaaagtgtgagaactcgactcaccaaac- 114  Q
    |||| ||||||||||||||| |||  ||||||| ||||||| ||||||||| ||  ||||||||| ||||||||| |||||| ||| ||| ||||||||     
T  11828572 agaagaaaccaaattgtgagtacttaactcaccaaacaaccaaaatgtgagcacccgactcaccagacaaccaaattgtgagcacttgacccaccaaact 11828671  T
Q  115 aaccaattgtaagcact 131  Q
    ||| |||||| ||||||    
T  11828672 aacaaattgtgagcact 11828688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 73 - 162
Target Start/End: Original strand, 11828598 - 11828688
Alignment:
Q  73 actcaccaaacaaccaaagtgtgagaactcgactcaccaaacaacc-aattgtaagcactcgattcaccaaacaaatcaattgtgagcact 162  Q
    |||||||||||||||||| |||||| || |||||||||| |||||| |||||| |||||| ||  |||||||| ||  |||||||||||||    
T  11828598 actcaccaaacaaccaaaatgtgagcacccgactcaccagacaaccaaattgtgagcacttgacccaccaaactaacaaattgtgagcact 11828688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 75 - 148
Target Start/End: Complemental strand, 21813896 - 21813822
Alignment:
Q  75 tcaccaaacaaccaaagtgtgagaactcgactcaccaaacaacc-aattgtaagcactcgattcaccaaacaaat 148  Q
    ||||||| |||||||| |||||| |||||||||||||||||||| || ||| |||||| || |||||||||||||    
T  21813896 tcaccaagcaaccaaattgtgagcactcgactcaccaaacaaccaaagtgtgagcacttgactcaccaaacaaat 21813822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 74 - 116
Target Start/End: Complemental strand, 44338334 - 44338292
Alignment:
Q  74 ctcaccaaacaaccaaagtgtgagaactcgactcaccaaacaa 116  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  44338334 ctcaccaaacaaccaaaatgtgagaactcgactcaccaaacaa 44338292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 74 - 116
Target Start/End: Original strand, 46963840 - 46963882
Alignment:
Q  74 ctcaccaaacaaccaaagtgtgagaactcgactcaccaaacaa 116  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  46963840 ctcaccaaacaaccaaagtgtgagaaatcgactcaccaaacaa 46963882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 46963805 - 46963913
Alignment:
Q  8 aaaagggggagaaaaaaccaaattgtgagcactcgactcacctaacaaccaaa-tgtgagaactagactcaccaaacaaccaaagtgtgagaactcgact 106  Q
    |||| |||||||| ||||||||||||||||||  | |||||| |||||||||| |||||||| | |||||||||||||| |||| | ||||  || |||     
T  46963805 aaaaaggggagaagaaaccaaattgtgagcacatg-ctcaccaaacaaccaaagtgtgagaaatcgactcaccaaacaagcaaattatgagttcttgacc 46963903  T
Q  107 caccaaacaa 116  Q
    ||||||||||    
T  46963904 caccaaacaa 46963913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 15623033 - 15623080
Alignment:
Q  72 gactcaccaaacaaccaaagtgtgagaactcgactcaccaaacaaccaa 120  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  15623033 gactcaccaaacaaccaaa-tgtgagaactagactcaccaaacaaccaa 15623080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 120
Target Start/End: Original strand, 15623127 - 15623173
Alignment:
Q  73 actcaccaaacaaccaaagtgtgagaactcgactcaccaaacaaccaa 120  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||    
T  15623127 actcaccaaacaaccaaa-tgtgagaactagactcaccaaacaaccaa 15623173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 120
Target Start/End: Original strand, 15623220 - 15623266
Alignment:
Q  73 actcaccaaacaaccaaagtgtgagaactcgactcaccaaacaaccaa 120  Q
    ||||||||||||| |||| |||||||||| ||||||||||||||||||    
T  15623220 actcaccaaacaatcaaa-tgtgagaactagactcaccaaacaaccaa 15623266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 120
Target Start/End: Complemental strand, 44338518 - 44338472
Alignment:
Q  73 actcaccaaacaaccaaagtgtgagaactcgactcaccaaacaaccaa 120  Q
    |||||||| ||||||||| ||||||||||| |||||||||||||||||    
T  44338518 actcaccagacaaccaaa-tgtgagaactctactcaccaaacaaccaa 44338472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 24137135 - 24137046
Alignment:
Q  1 aagaatcaaaagggggagaaaaaaccaaattgtgagcactcgactcacctaacaaccaaatgtgagaactagactcaccaaacaaccaaa 90  Q
    ||||| ||||||||||   |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  24137135 aagaaccaaaaggggggagaaaaaccaaattgtgagcactcaactcaccaaacaaccaaatgtgagaactagactcaccaaacaaccaaa 24137046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 9511898 - 9511782
Alignment:
Q  1 aagaatcaaaagggggagaaaaaaccaaattgtgagcactcgactcacctaacaaccaaat-gtgagaactagactcaccaaacaaccaaagtgtgagaa 99  Q
    ||||||||||||||||| || ||| ||||||||||| | |  ||||||| ||||||||||| ||||| ||| |||||||||||||||| ||||||||| |    
T  9511898 aagaatcaaaagggggataagaaatcaaattgtgagtatttaactcaccaaacaaccaaattgtgagcactcgactcaccaaacaaccgaagtgtgagca 9511799  T
Q  100 ctcgactcaccaaacaa 116  Q
    |||||||||||||||||    
T  9511798 ctcgactcaccaaacaa 9511782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 11335371 - 11335485
Alignment:
Q  1 aagaatcaaaagggggagaaaaaaccaaattgtgagcactcgactcacctaacaaccaaa-tgtgagaactagactcaccaaacaaccaaagtgtgagaa 99  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||| |||||| |||   | |||||||||| |||| |||||| |    
T  11335371 aagaatcaaaagggggagaagaaaccaaattgtgagcattcgactcaccaaacaaccaaagtgtgagtact--tcccaccaaacaaacaaattgtgagca 11335468  T
Q  100 ctcgactcaccaaacaa 116  Q
    || ||| | ||||||||    
T  11335469 cttgacccgccaaacaa 11335485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 147
Target Start/End: Complemental strand, 9511856 - 9511781
Alignment:
Q  73 actcaccaaacaaccaaagtgtgagaactcgactcaccaaacaacc-aattgtaagcactcgattcaccaaacaaa 147  Q
    |||||||||||||||||| |||||| |||||||||||||||||||| || ||| ||||||||| ||||||||||||    
T  9511856 actcaccaaacaaccaaattgtgagcactcgactcaccaaacaaccgaagtgtgagcactcgactcaccaaacaaa 9511781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 24136980 - 24136891
Alignment:
Q  1 aagaatcaaaagggggagaaaaaaccaaattgtgagcactcgactcacctaacaaccaaa-tgtgagaactagactcaccaaacaaccaaa 90  Q
    |||||||| ||||||| ||| |||| ||||||||||||||||||||||| |||||||||| |||||||| | | |||||||||||||||||    
T  24136980 aagaatcagaaggggg-gaagaaacaaaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaa 24136891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 9511845 - 9511777
Alignment:
Q  23 aaccaaattgtgagcactcgactcacctaacaaccaaa-tgtgagaactagactcaccaaacaaccaaa 90  Q
    ||||||||||||||||||||||||||| ||||||| || |||||| ||| |||||||||||||| ||||    
T  9511845 aaccaaattgtgagcactcgactcaccaaacaaccgaagtgtgagcactcgactcaccaaacaaacaaa 9511777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 120
Target Start/End: Complemental strand, 24136951 - 24136892
Alignment:
Q  61 tgtgagaactagactcaccaaacaaccaaagtgtgagaactcgactcaccaaacaaccaa 120  Q
    |||||| ||| ||||||||||||||||||| |||||||| ||| ||||||||||||||||    
T  24136951 tgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaa 24136892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 183
Target Start/End: Complemental strand, 9511856 - 9511776
Alignment:
Q  104 actcaccaaacaaccaa-ttgtaagcactcgattcaccaaacaaatcaattgtgagcactcgacttatcaaacaaccaaac 183  Q
    ||||||||||||||||| |||| ||||||||| |||||||||||   || ||||||||||||||| | ||||||| |||||    
T  9511856 actcaccaaacaaccaaattgtgagcactcgactcaccaaacaaccgaagtgtgagcactcgactcaccaaacaaacaaac 9511776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 24137035 - 24136983
Alignment:
Q  9 aaagggggagaaaaaaccaaattgtgagcactcgactcacctaacaaccaaat 61  Q
    |||||||||||| ||||||||||||||| ||| |||||||| |||||||||||    
T  24137035 aaagggggagaagaaaccaaattgtgagaactagactcaccaaacaaccaaat 24136983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 120
Target Start/End: Complemental strand, 24137093 - 24137047
Alignment:
Q  73 actcaccaaacaaccaaagtgtgagaactcgactcaccaaacaaccaa 120  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||    
T  24137093 actcaccaaacaaccaaa-tgtgagaactagactcaccaaacaaccaa 24137047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 116
Target Start/End: Complemental strand, 24136855 - 24136813
Alignment:
Q  74 ctcaccaaacaaccaaagtgtgagaactcgactcaccaaacaa 116  Q
    ||||||||||||||| | ||||||||||||||||||| |||||    
T  24136855 ctcaccaaacaaccataatgtgagaactcgactcacccaacaa 24136813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 146
Target Start/End: Complemental strand, 24137113 - 24137051
Alignment:
Q  84 aaccaaagtgtgagaactcgactcaccaaacaaccaattgtaagcactcgattcaccaaacaa 146  Q
    ||||||| |||||| |||| ||||||||||||||||| ||| || ||| || |||||||||||    
T  24137113 aaccaaattgtgagcactcaactcaccaaacaaccaaatgtgagaactagactcaccaaacaa 24137051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 90
Target Start/End: Complemental strand, 24137013 - 24136984
Alignment:
Q  61 tgtgagaactagactcaccaaacaaccaaa 90  Q
    ||||||||||||||||||||||||||||||    
T  24137013 tgtgagaactagactcaccaaacaaccaaa 24136984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 120
Target Start/End: Complemental strand, 24137021 - 24136985
Alignment:
Q  84 aaccaaagtgtgagaactcgactcaccaaacaaccaa 120  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  24137021 aaccaaattgtgagaactagactcaccaaacaaccaa 24136985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 54147802 - 54147687
Alignment:
Q  1 aagaatcaaaagggggagaaaaaaccaaattgtgagcactcgactcacctaacaaccaaa-tgtgagaactagactcaccaaacaaccaaagtgtgagaa 99  Q
    ||||||||||||||||| || ||||||||||||||||||   ||||||| |||||||||| |||||||||||||||||||||||||| |||||||||| |    
T  54147802 aagaatcaaaaggggga-aagaaaccaaattgtgagcaccaaactcaccaaacaaccaaaatgtgagaactagactcaccaaacaactaaagtgtgagca 54147704  T
Q  100 ctcgactcaccaaacaa 116  Q
    |  ||||||||||||||    
T  54147703 cctgactcaccaaacaa 54147687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 16870837 - 16870748
Alignment:
Q  1 aagaatcaaaagggggagaaaaaaccaaattgtgagcactcgactcacctaacaaccaaatgtgagaactagactcaccaaacaaccaaa 90  Q
    |||||| |||| |||||||| |||||||||| ||||||||||||||||  ||||||||||||| |||||| ||||||| || ||||||||    
T  16870837 aagaataaaaaaggggagaagaaaccaaattatgagcactcgactcacgaaacaaccaaatgtaagaacttgactcactaatcaaccaaa 16870748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 54147926 - 54147869
Alignment:
Q  1 aagaatcaaaagggggagaaaaaaccaaattgtgagcactcgactcacctaacaaccaa 59  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||    
T  54147926 aagaatcaaaagggg-agaagaaaccaaattgtgagcactcgactcaccaaacaaccaa 54147869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 24 - 120
Target Start/End: Complemental strand, 42265492 - 42265397
Alignment:
Q  24 accaaattgtgagcactcgactcacctaacaaccaaa-tgtgagaactagactcaccaaacaaccaaagtgtgagaactcgactcaccaaacaaccaa 120  Q
    ||||||||||||||||| || ||||| |||||||||| |||||| ||| |||||||||||||||||||  ||||| ||| || |||||||||||||||    
T  42265492 accaaattgtgagcacttgaatcaccaaacaaccaaattgtgag-actcgactcaccaaacaaccaaacagtgagcacttga-tcaccaaacaaccaa 42265397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 74 - 116
Target Start/End: Complemental strand, 16870701 - 16870659
Alignment:
Q  74 ctcaccaaacaaccaaagtgtgagaactcgactcaccaaacaa 116  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  16870701 ctcaccaaacaaccaaagtgtgagaaatcgactcaccaaacaa 16870659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 73 - 162
Target Start/End: Complemental strand, 54147761 - 54147671
Alignment:
Q  73 actcaccaaacaaccaaagtgtgagaactcgactcaccaaacaac-caattgtaagcactcgattcaccaaacaaatcaattgtgagcact 162  Q
    |||||||||||||||||| |||||||||| |||||||||||||||  || ||| |||||  || ||||||||||||  |||| ||||||||    
T  54147761 actcaccaaacaaccaaaatgtgagaactagactcaccaaacaactaaagtgtgagcacctgactcaccaaacaaacaaattatgagcact 54147671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 16870731 - 16870628
Alignment:
Q  13 ggggagaaaaaaccaaattgtgagcactcgactcacctaacaaccaaa-tgtgagaactagactcaccaaacaaccaaagtgtgagaactcgactcacca 111  Q
    |||||||| ||||||||||||||||||  | |||||| |||||||||| |||||||| | |||||||||||||| |||| | ||||  || ||| |||||    
T  16870731 ggggagaagaaaccaaattgtgagcacatg-ctcaccaaacaaccaaagtgtgagaaatcgactcaccaaacaagcaaattatgagttcttgacccacca 16870633  T
Q  112 aacaa 116  Q
    |||||    
T  16870632 aacaa 16870628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 54147547 - 54147499
Alignment:
Q  210 aactgaaccaaacgaaccaagcgaagacaaattgatgaaccaaaatgaa 258  Q
    ||||||||||||||||||| || |||||||||||| ||||||| |||||    
T  54147547 aactgaaccaaacgaaccatgcaaagacaaattgacgaaccaatatgaa 54147499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 54147750 - 54147651
Alignment:
Q  23 aaccaaattgtgagcactcgactcacctaacaaccaaa-tgtgagaactagactcaccaaacaaccaaagtgtgagaactcgactcaccaaacaaccaat 121  Q
    ||||||| |||||| ||| |||||||| |||||| ||| |||||| ||  |||||||||||||| |||| | |||| ||| ||| |||||||||| ||||    
T  54147750 aaccaaaatgtgagaactagactcaccaaacaactaaagtgtgagcacctgactcaccaaacaaacaaattatgagcacttgacccaccaaacaaacaat 54147651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 54147864 - 54147811
Alignment:
Q  1 aagaatcaaaagggggagaaaaaaccaaattgtgagcactcgactcacctaacaa 55  Q
    ||||||||||||||| |||| |||||||||| |||||||||||| |||| |||||    
T  54147864 aagaatcaaaagggg-agaagaaaccaaattatgagcactcgacccaccaaacaa 54147811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 24225551 - 24225514
Alignment:
Q  110 caaacaaccaa-ttgtaagcactcgattcaccaaacaa 146  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  24225551 caaacaaccaaattgtaagcactcgattcaccaaacaa 24225514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 42265462 - 42265396
Alignment:
Q  23 aaccaaattgtgagcactcgactcacctaacaaccaaat-gtgagaactagactcaccaaacaaccaaa 90  Q
    |||||||||||||| |||||||||||| ||||||||||  ||||| ||| || ||||||||||||||||    
T  42265462 aaccaaattgtgag-actcgactcaccaaacaaccaaacagtgagcacttga-tcaccaaacaaccaaa 42265396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 120
Target Start/End: Complemental strand, 54147905 - 54147869
Alignment:
Q  84 aaccaaagtgtgagaactcgactcaccaaacaaccaa 120  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  54147905 aaccaaattgtgagcactcgactcaccaaacaaccaa 54147869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 9e-27; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 20242237 - 20242148
Alignment:
Q  1 aagaatcaaaagggggagaaaaaaccaaattgtgagcactcgactcacctaacaaccaaatgtgagaactagactcaccaaacaaccaaa 90  Q
    |||||||||||||||||||| |||||||||||||||||| | |||||||  |||||||||||||||||||  ||||||||||||||||||    
T  20242237 aagaatcaaaagggggagaagaaaccaaattgtgagcacactactcaccagacaaccaaatgtgagaactctactcaccaaacaaccaaa 20242148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 20242052 - 20241964
Alignment:
Q  1 aagaatcaaaagggggagaaaaaaccaaattgtgagcactcgactcacctaacaaccaaa-tgtgagaactagactcaccaaacaaccaaa 90  Q
    ||||||||||||||| |||| |||||||||||||||||| || |||||| |||||||||| |||||||||| |||||||||||||| ||||    
T  20242052 aagaatcaaaagggg-agaagaaaccaaattgtgagcacacg-ctcaccaaacaaccaaaatgtgagaactcgactcaccaaacaagcaaa 20241964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 20242144 - 20242056
Alignment:
Q  1 aagaatcaaaagggggagaaaaaaccaaattgtgagcactcgactcacctaacaaccaaa-tgtgagaactagactcaccaaacaaccaaa 90  Q
    ||||||||||||||| |||| |||||||||||||||||| || |||||| |||||||||| |||||||||| |||||||||||| ||||||    
T  20242144 aagaatcaaaagggg-agaagaaaccaaattgtgagcacacg-ctcaccaaacaaccaaagtgtgagaactcgactcaccaaaccaccaaa 20242056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 20250923 - 20251011
Alignment:
Q  1 aagaatcaaaagggggagaaaaaaccaaattgtgagcactcgactcacctaacaaccaaa-tgtgagaactagactcaccaaacaaccaaa 90  Q
    ||||||||||||||| |||| |||||||||||||||||| || |||||| |||||||||| |||||||||| |||||||||||| ||||||    
T  20250923 aagaatcaaaagggg-agaagaaaccaaattgtgagcacacg-ctcaccaaacaaccaaagtgtgagaactcgactcaccaaaccaccaaa 20251011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 20251015 - 20251103
Alignment:
Q  1 aagaatcaaaagggggagaaaaaaccaaattgtgagcactcgactcacctaacaaccaaa-tgtgagaactagactcaccaaacaaccaaa 90  Q
    ||||||||||||||| |||| |||||||||||||||||| || |||||| |||||||||| |||||||||| |||||||||||||| ||||    
T  20251015 aagaatcaaaagggg-agaagaaaccaaattgtgagcacacg-ctcaccaaacaaccaaaatgtgagaactcgactcaccaaacaagcaaa 20251103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 120
Target Start/End: Complemental strand, 20242103 - 20242057
Alignment:
Q  74 ctcaccaaacaaccaaagtgtgagaactcgactcaccaaacaaccaa 120  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||    
T  20242103 ctcaccaaacaaccaaagtgtgagaactcgactcaccaaaccaccaa 20242057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 120
Target Start/End: Original strand, 20250964 - 20251010
Alignment:
Q  74 ctcaccaaacaaccaaagtgtgagaactcgactcaccaaacaaccaa 120  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||    
T  20250964 ctcaccaaacaaccaaagtgtgagaactcgactcaccaaaccaccaa 20251010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 74 - 116
Target Start/End: Complemental strand, 20242011 - 20241969
Alignment:
Q  74 ctcaccaaacaaccaaagtgtgagaactcgactcaccaaacaa 116  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  20242011 ctcaccaaacaaccaaaatgtgagaactcgactcaccaaacaa 20241969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 74 - 116
Target Start/End: Original strand, 20251056 - 20251098
Alignment:
Q  74 ctcaccaaacaaccaaagtgtgagaactcgactcaccaaacaa 116  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  20251056 ctcaccaaacaaccaaaatgtgagaactcgactcaccaaacaa 20251098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 120
Target Start/End: Complemental strand, 20242195 - 20242149
Alignment:
Q  73 actcaccaaacaaccaaagtgtgagaactcgactcaccaaacaaccaa 120  Q
    |||||||| ||||||||| ||||||||||| |||||||||||||||||    
T  20242195 actcaccagacaaccaaa-tgtgagaactctactcaccaaacaaccaa 20242149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 13 - 90
Target Start/End: Original strand, 15629942 - 15630019
Alignment:
Q  13 ggggagaaaaaaccaaattgtgagcactcgactcacctaacaaccaaatgtgagaactagactcaccaaacaaccaaa 90  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||    
T  15629942 ggggagaagaaaccaaattgtgagcactcgactcaccaaacaaccaaatgtgagaattagactcactaaacaaccaaa 15630019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 15630023 - 15630107
Alignment:
Q  1 aagaatcaaaagggggagaaaaaaccaaattgtgagcactcgactcacctaacaaccaaa-tgtgagaactagactcaccaaacaa 85  Q
    ||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||| |||||| ||| ||||||||||||||    
T  15630023 aagaatcaaaagggg-agaagaaaccaaattgtgagcactcgactcaccaaacaaccaaagtgtgagcactcgactcaccaaacaa 15630107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 15630052 - 15630107
Alignment:
Q  61 tgtgagaactagactcaccaaacaaccaaagtgtgagaactcgactcaccaaacaa 116  Q
    |||||| ||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  15630052 tgtgagcactcgactcaccaaacaaccaaagtgtgagcactcgactcaccaaacaa 15630107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 19825087 - 19825153
Alignment:
Q  54 aaccaaatgtgagaactagactcaccaaacaaccaaagtgtgagaactcgactcaccaaacaaccaa 120  Q
    |||||| |||||| |||  |||||||||||||||||| |||||| ||||||||| ||||||||||||    
T  19825087 aaccaattgtgagcacttaactcaccaaacaaccaaattgtgagcactcgactcgccaaacaaccaa 19825153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 84 - 147
Target Start/End: Original strand, 15630044 - 15630108
Alignment:
Q  84 aaccaaagtgtgagaactcgactcaccaaacaacc-aattgtaagcactcgattcaccaaacaaa 147  Q
    ||||||| |||||| |||||||||||||||||||| || ||| ||||||||| ||||||||||||    
T  15630044 aaccaaattgtgagcactcgactcaccaaacaaccaaagtgtgagcactcgactcaccaaacaaa 15630108  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 19825091 - 19825161
Alignment:
Q  28 aattgtgagcactcgactcacctaacaaccaaa-tgtgagaactagactcaccaaacaaccaaagtgtgag 97  Q
    |||||||||||||  ||||||| |||||||||| |||||| ||| ||||| ||||||||||||| ||||||    
T  19825091 aattgtgagcacttaactcaccaaacaaccaaattgtgagcactcgactcgccaaacaaccaaattgtgag 19825161  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 2072389 - 2072432
Alignment:
Q  73 actcaccaaacaaccaaagtgtgagaactcgactcaccaaacaa 116  Q
    |||||||||||||||||||| |||| |||||||||| |||||||    
T  2072389 actcaccaaacaaccaaagtatgagcactcgactcatcaaacaa 2072432  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 120
Target Start/End: Original strand, 2075919 - 2075966
Alignment:
Q  73 actcaccaaacaaccaaagtgtgagaactcgactcaccaaacaaccaa 120  Q
    |||||||||||||||||||| |||| |||||||||  |||||||||||    
T  2075919 actcaccaaacaaccaaagtatgagcactcgactcgtcaaacaaccaa 2075966  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 19825117 - 19825155
Alignment:
Q  23 aaccaaattgtgagcactcgactcacctaacaaccaaat 61  Q
    |||||||||||||||||||||||| || |||||||||||    
T  19825117 aaccaaattgtgagcactcgactcgccaaacaaccaaat 19825155  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 120
Target Start/End: Original strand, 15629952 - 15629988
Alignment:
Q  84 aaccaaagtgtgagaactcgactcaccaaacaaccaa 120  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  15629952 aaccaaattgtgagcactcgactcaccaaacaaccaa 15629988  T

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Target: scaffold0499 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 122
Target Start/End: Original strand, 7238 - 7335
Alignment:
Q  23 aaccaaattgtgagcactcgactcacctaacaaccaaatgtgagaactagactcaccaaacaaccaaagtgtgagaactcgactcaccaaacaaccaatt 122  Q
    |||||||||||||||||  |||||||| ||| |  || |||||| | | | |||| ||||||| |||  |||||| ||||||||||||||||||||||||    
T  7238 aaccaaattgtgagcacctgactcaccaaacta--aattgtgagcatttgtctcaacaaacaatcaatttgtgagcactcgactcaccaaacaaccaatt 7335  T

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