View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13692_high_2 (Length: 616)
Name: NF13692_high_2
Description: NF13692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13692_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 7 - 597
Target Start/End: Complemental strand, 836547 - 835985
Alignment:
| Q |
7 |
atgtcgaagaatatagtgcggtattttctaaagtagtaaagatcctgtgcaatattgcacgattgcgaaaaaacaaagtgacataaaatagtaaatatca |
106 |
Q |
| |
|
||||| || ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
836547 |
atgtctaaaaatatagtgcggtatttactaaagtagtaaagatcatgtgcaatattgcacgattgcgaaaaaacaaagtgacataaaatagtaaatatca |
836448 |
T |
|
| Q |
107 |
cgtacaattctgttaaacttaatgtctttctgtgcgttcgaattcgctgtccttcgattttctaaagttacttcaattttctgaagttaccataaaaagt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
836447 |
cgtacaattctgttaaacttaatgtctttctgtgcgttcgaattcgctgtccttcaattttctaaagttact----------gaagttaccataaaaagt |
836358 |
T |
|
| Q |
207 |
ctgagggtactcgtctttgatgtgaaacgacgatccatgtctagtctttaaaactggattaggtttggattgaacacttccagccttctttacttgtgtt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
836357 |
ctgagggtactcgtctttgatgtgaaacgacgattcatgtctagtctttaaaactggattaggtttggattgaacacttccagccttctttacttgtgtt |
836258 |
T |
|
| Q |
307 |
tctgaatttctatccggtttatttagacgggaatcggaaagtgacttgattcccactagctcaggatcaggtggatacttgtatggtatttttctctcat |
406 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
836257 |
tctgaattcctatccggtttatttagatgggaatcggaaagtgacttgattcccactagctcaggatcaggtggatacttgtatggtaattttctctcat |
836158 |
T |
|
| Q |
407 |
tcatctttctaaatgtaatagaaatccttcagcaaaagacaagtattaaataaaaatcatacattaaaacaaaaaagtattttcaagtgtatttgatatt |
506 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
836157 |
ccatctttctaaatgtaatagaaatcctgcagcaaaagacaagtat------------------taaaacaaaaaagtattttcaagtgtatttgatatt |
836076 |
T |
|
| Q |
507 |
attgtatttaaagtacctttttgacgacacagatggaatacaatgtttagcaatatctgctccattaccattcaaaacgaacactgacctg |
597 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
836075 |
atggtatttaaagtacctttttgacgacacagatggaatacaatgtttagcaatatctgctccattaccattcaaaacgaatactgacctg |
835985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 357 - 597
Target Start/End: Complemental strand, 814492 - 814248
Alignment:
| Q |
357 |
tcccactagctcaggatcaggtggatacttgtatggtatttttctctcattcatctttctaaatgtaatagaaatcc--ttcagcaaaag-acaagtatt |
453 |
Q |
| |
|
||||||||| ||| ||||||||| ||| ||||||||| ||||||| || |||||||||||||||||||||||||| | ||||||||| | || |||| |
|
|
| T |
814492 |
tcccactagatcatgatcaggtgaataagtgtatggtaactttctcttatccatctttctaaatgtaatagaaatcctatacagcaaaagaataattatt |
814393 |
T |
|
| Q |
454 |
aaataaaaatcatacattaaaacaaaaaagtattttcaagtgtatttgata-ttattgtatttaaagtacctttttgacgacacagatggaatacaatgt |
552 |
Q |
| |
|
| |||||| | ||||| ||||||| | || ||||||||||| || | | || | |||||| || ||||||||||| |||| |||||||| || ||| |
|
|
| T |
814392 |
agataaaagtaatacaataaaacatgataggattttcaagtgaatacaaaatttgtggtatttgaaatacctttttgataacactgatggaatgcagtgt |
814293 |
T |
|
| Q |
553 |
ttagcaatatctgctccattaccattcaaaacgaacactgacctg |
597 |
Q |
| |
|
||||| || ||||| |||||||| ||||| || |||||||||||| |
|
|
| T |
814292 |
ttagcgatgtctgcaccattacccttcaagacaaacactgacctg |
814248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University