View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13692_low_11 (Length: 359)
Name: NF13692_low_11
Description: NF13692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13692_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 14 - 341
Target Start/End: Complemental strand, 23430891 - 23430561
Alignment:
| Q |
14 |
aagaatatgaacacttaacattgcatcttcatttccactagacccacatcaacaaatcaaattatccta---atacataaagtacattaactagtataac |
110 |
Q |
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| T |
23430891 |
aagaaaatgaacacttaacattgcatcttcatttccactagacccacatcaacaaatcaaattatcctcctcatacataaagtacattaactagtataac |
23430792 |
T |
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| Q |
111 |
tattataatataactggaaggaatgtaagacgagatggcatgagaaattttctcagcagcatctacaacatcttgtccttgatttgcgatatttccaaca |
210 |
Q |
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| T |
23430791 |
tattataatataactggaaggaatgtaagacgagatggcatgagaaattttctcagcggcatctacaacatcttgtccttgattcgcgatatttccaaca |
23430692 |
T |
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| Q |
211 |
tcttttgcagtttcaccaatcctatctgcaccttcactaacaacattgaagaccccttgcatgcttctacgagtggaaggcaatgtcaggtgaacatggg |
310 |
Q |
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| T |
23430691 |
tcttttgcagtttcaccaatcctatctgcaccttcactaacaacattgaagaccccttgcatgcttctacgagtggaaggcaatgtcaggtgaacatggg |
23430592 |
T |
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| Q |
311 |
ttggagaataagtggtgggaagattcttaac |
341 |
Q |
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| T |
23430591 |
ttggagagtaagtggtgggaagattcttaac |
23430561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 74 - 186
Target Start/End: Complemental strand, 23438901 - 23438789
Alignment:
| Q |
74 |
attatcctaatacataaagtacattaactagtataactattataatataactggaaggaatgtaagacgagatggcatgagaaattttctcagcagcatc |
173 |
Q |
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| T |
23438901 |
attatccttatacataaactacataaaccagtataactgttataatataactggaaggaatgtaaaaagaggtggcatgggaaactttcccagcaacatc |
23438802 |
T |
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| Q |
174 |
tacaacatcttgt |
186 |
Q |
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| T |
23438801 |
tacgacatcttgt |
23438789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 273 - 333
Target Start/End: Complemental strand, 23438687 - 23438627
Alignment:
| Q |
273 |
gcttctacgagtggaaggcaatgtcaggtgaacatgggttggagaataagtggtgggaaga |
333 |
Q |
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| T |
23438687 |
gcttctacgagtggaaggcaatgtcaggtgaagatgggtagaagagtaagtcgtgggaaga |
23438627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 127
Target Start/End: Complemental strand, 23445637 - 23445571
Alignment:
| Q |
61 |
atcaacaaatcaaattatcctaatacataaagtacattaactagtataactattataatataactgg |
127 |
Q |
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| T |
23445637 |
atcaacaaataaaattattctcatgcataaagtacataaaccattataactgttataatataactgg |
23445571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 333
Target Start/End: Complemental strand, 23445431 - 23445362
Alignment:
| Q |
264 |
cccttgcatgcttctacgagtggaaggcaatgtcaggtgaacatgggttggagaataagtggtgggaaga |
333 |
Q |
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| T |
23445431 |
ccctagcatgcgtctaccggtggaaggcaatgtcatgtgaatatgggtaggagagtaagtggcgggaaga |
23445362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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