View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13692_low_16 (Length: 280)
Name: NF13692_low_16
Description: NF13692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13692_low_16 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 22 - 280
Target Start/End: Original strand, 2577984 - 2578242
Alignment:
| Q |
22 |
atagtgcagatttaaattgagggtgaatttaacaagatcacaatgacaccgtgtgattttgacaaaaacaactcgtgaaacttcaacaaaattatagtat |
121 |
Q |
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| T |
2577984 |
atagtgcagatttgaattgagggtgaatttaacaaaatcacaatgacaccgtgtgattttgacaaaaacaactcgtgaaacttcaacaaaattatagtat |
2578083 |
T |
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| Q |
122 |
tactataatttcgttaaagccaccgtaatttcaatcatacacataaacattaagtaaaataaaaacgataatgaaagtattgtaacataagtattggtat |
221 |
Q |
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| T |
2578084 |
tactataatttcgttaaagccaccgtaatttcaatcatacacataaacattaagtaaaataaaaacgataatgaaagtattgtaacataagtattggtat |
2578183 |
T |
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| Q |
222 |
ggcttgaacctttcacatgaaactctatgaacatttgaaaccattaggaacagattttt |
280 |
Q |
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| T |
2578184 |
ggcttgaacctttcacatgaaactctatgaacattggaaaccattaggaacagattttt |
2578242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 106 - 280
Target Start/End: Original strand, 2599568 - 2599745
Alignment:
| Q |
106 |
aacaaaattatagtatta--ctataatttcgttaaagccaccgtaatttcaatcatacacataaacattaagtaaaataaaaacgataatgaaagtatt- |
202 |
Q |
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| T |
2599568 |
aacaaaattatagtattatactataatttcatgcaagtcggtgtaatttcaatcgtgcacagaaacaataagtaaaataaaaacaacaatgaaagtagta |
2599667 |
T |
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| Q |
203 |
gtaacataagtattggtatggcttgaacctttcacatgaaactctatgaacatttgaaaccattaggaacagattttt |
280 |
Q |
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| T |
2599668 |
gtaacataagtattggtatggcttgaacctttcacatgaaactctatgaacattggaaaccattaggaacagattttt |
2599745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 152 - 280
Target Start/End: Original strand, 2591855 - 2591991
Alignment:
| Q |
152 |
tcaatcatacacataaacattaagtaaaataaaaacgataatgaaagta-ttgtaacataagtattggtatggc-ttgaacctttcac------atgaaa |
243 |
Q |
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| T |
2591855 |
tcaatcgtgcacataaacaagaagtaaaataaaaacgataatgaaagtagtagtaacataagtactcgtatggctttgaacctttcacatgaagatgaaa |
2591954 |
T |
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| Q |
244 |
ctctatgaacatttgaaaccattaggaacagattttt |
280 |
Q |
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| T |
2591955 |
ctctatgaacattggaaaccattaggaacagattttt |
2591991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 203 - 280
Target Start/End: Original strand, 2608204 - 2608281
Alignment:
| Q |
203 |
gtaacataagtattggtatggcttgaacctttcacatgaaactctatgaacatttgaaaccattaggaacagattttt |
280 |
Q |
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| T |
2608204 |
gtaacataagtattagtatggtttgaacctttgacatgaaagtctatgaacattggaaacctgaaggaacagattttt |
2608281 |
T |
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