View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13692_low_18 (Length: 273)
Name: NF13692_low_18
Description: NF13692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13692_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 11 - 255
Target Start/End: Original strand, 13189218 - 13189472
Alignment:
| Q |
11 |
cagagatttaaaaatatatcaacttactcattcataaacaacataa----------tataaaaattaacatatagtaatgatgtcaaatgaatctataga |
100 |
Q |
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| T |
13189218 |
cagagatttaaaaatatatcaacttactcattcataaacaacatatcatatgaatctataaaaattaacatatagtaatgatgtcaaatgaatctataga |
13189317 |
T |
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| Q |
101 |
atttaattggagaatgaattcatatcatatggaataaaacatatataatttcaaatcacctatgttttaccgcaactgagctgttcgactggaggcgaac |
200 |
Q |
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| T |
13189318 |
atttaattggagaatgaattcatatcatatggaataaaacatatataatttcaaatcacctatgttttaccgcaactgagctgttcgactggaggcgaac |
13189417 |
T |
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| Q |
201 |
atcgagtctcgcggctgttggttgaaccttacagtatgtgttcctggataaagaa |
255 |
Q |
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| T |
13189418 |
atcgagtctcgcggctgttggttgaaccttacagtatgtgttcctggataaagaa |
13189472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 85 - 255
Target Start/End: Original strand, 13180980 - 13181150
Alignment:
| Q |
85 |
caaatgaatctatagaatttaattggagaatgaattcatatcatatggaataaaacatatataatttcaaatca--cctatgttttaccgcaactgagct |
182 |
Q |
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| T |
13180980 |
caaatggatctatcaaatttaataggagaaagaattcat-tcaaattgagtaaaacatatatcgtt-caaatcaaaccaatcttttaccgccgttgagct |
13181077 |
T |
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| Q |
183 |
gttcgactggaggcgaacatcgagtctcgcggctgttggttgaaccttacagtatgtgttcctggataaagaa |
255 |
Q |
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| T |
13181078 |
gctcaactggacgcgaacatcaagtctcgcagctgtttgttgaaccttacaatatgtgttccaggataaagaa |
13181150 |
T |
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