View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13692_low_19 (Length: 254)
Name: NF13692_low_19
Description: NF13692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13692_low_19 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 9 - 242
Target Start/End: Original strand, 40643536 - 40643769
Alignment:
| Q |
9 |
ccaaatttcaatattacatcattacattagttaaaggcaaaatgggaaggcacacaaaaaagacataagtaacaagaacgcttaattactcaccaaacac |
108 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40643536 |
ccaaatttcaatattacatcatcacattagttaaagccaaaatgggaaggcacacaaaaaagacataagtaacaagaacgcttaattactcaccaaacac |
40643635 |
T |
|
| Q |
109 |
tttatgagagcttcaactttgcccttacatggcccttaaaaatctggaattgttcagttatgcctaaatgagccatcaaaagccagacatgggtaagcaa |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40643636 |
tttatgagagcttcaactttgcccttacatgacccttagaaatctggaattgttcagttatgcctaaatgagccatcaaaagccagacatgggtaagcaa |
40643735 |
T |
|
| Q |
209 |
ctcaccaccctggctaagttgcctagcatgatga |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
40643736 |
ctcaccaccctggctaagttgcctagcatgatga |
40643769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 90 - 247
Target Start/End: Original strand, 40652287 - 40652444
Alignment:
| Q |
90 |
ttaattactcaccaaacactttatgagagcttcaactttgcccttacatggcccttaaaaatctggaattgttcagttatgcctaaatgagccatcaaaa |
189 |
Q |
| |
|
|||| ||| ||||||||| ||||||||||||| ||||||||||||||||| || ||| ||||||| |||||||| ||||| ||||||||||||||||||| |
|
|
| T |
40652287 |
ttaactacccaccaaacattttatgagagctttaactttgcccttacatgacctttagaaatctgaaattgttcggttatacctaaatgagccatcaaaa |
40652386 |
T |
|
| Q |
190 |
gccagacatgggtaagcaactcaccaccctggctaagttgcctagcatgatgatgtcc |
247 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| | |||||| ||||||| ||| |||| |
|
|
| T |
40652387 |
gccagacatgggtaagcaactcaccaccttgggtgagttgcttagcatgttgaagtcc |
40652444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 104 - 247
Target Start/End: Original strand, 40642441 - 40642584
Alignment:
| Q |
104 |
aacactttatgagagcttcaactttgcccttacatggcccttaaaaatctggaattgttcagttatgcctaaatgagccatcaaaagccagacatgggta |
203 |
Q |
| |
|
|||| ||||| ||| | ||||||||||||||||||| || ||| ||||||| |||||||| ||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
40642441 |
aacattttataagaacgtcaactttgcccttacatgacctttagaaatctgaaattgttcggttatacctaaatgagccatcaaaagctagacatgggta |
40642540 |
T |
|
| Q |
204 |
agcaactcaccaccctggctaagttgcctagcatgatgatgtcc |
247 |
Q |
| |
|
|| ||||| |||||||||||||| ||| ||||||||||| |||| |
|
|
| T |
40642541 |
agaaactcgccaccctggctaagctgcttagcatgatgaagtcc |
40642584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University