View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13692_low_21 (Length: 238)
Name: NF13692_low_21
Description: NF13692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13692_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 2578211 - 2578429
Alignment:
| Q |
1 |
tgaacattggaaaccattaggaacagatttttgacaagcactaagtaggagactaagtgtgacaggcacattcaagttgataccaagaacattagcctta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2578211 |
tgaacattggaaaccattaggaacagatttttgacaagcactaagtaggagactaagtgtgacaggcacattcaagttgataccaagaacgttagcctta |
2578310 |
T |
|
| Q |
101 |
atagcggtacaaagacaaactgctgcgtccaaatcagccaaaccttgaatcaatgtacaacatttgcttgaagcaggacttccaacaataacgttaacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
2578311 |
atagcggtacaaagacaaactgctgcgtccaaatcagccaaaccttgaatcaatgtacaacagttgcttgaagcaggacttccaacaataacattaacaa |
2578410 |
T |
|
| Q |
201 |
gtcctagaacatcagcaca |
219 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
2578411 |
gtcctagaacatcagcaca |
2578429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 2591960 - 2592178
Alignment:
| Q |
1 |
tgaacattggaaaccattaggaacagatttttgacaagcactaagtaggagactaagtgtgacaggcacattcaagttgataccaagaacattagcctta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2591960 |
tgaacattggaaaccattaggaacagatttttcacaagcactaagtaggagactaagtgtgacaggcacattcaagttgataccaagaacattagcctta |
2592059 |
T |
|
| Q |
101 |
atagcggtacaaagacaaactgctgcgtccaaatcagccaaaccttgaatcaatgtacaacatttgcttgaagcaggacttccaacaataacgttaacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
2592060 |
atagcggtacaaagacaaactgctgcgtccaaatcagccaaaccttgaatcaatgtacaacacttgcttgaagcaggacttccaacaataacattaacaa |
2592159 |
T |
|
| Q |
201 |
gtcctagaacatcagcaca |
219 |
Q |
| |
|
||||||||||||||||||| |
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| T |
2592160 |
gtcctagaacatcagcaca |
2592178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 2599714 - 2599932
Alignment:
| Q |
1 |
tgaacattggaaaccattaggaacagatttttgacaagcactaagtaggagactaagtgtgacaggcacattcaagttgataccaagaacattagcctta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2599714 |
tgaacattggaaaccattaggaacagatttttgacaagcactaagtaggagactaagtgtgacaggcacattcaagttgataccaagaacgttagcctta |
2599813 |
T |
|
| Q |
101 |
atagcggtacaaagacaaactgctgcgtccaaatcagccaaaccttgaatcaatgtacaacatttgcttgaagcaggacttccaacaataacgttaacaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||| |
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|
| T |
2599814 |
atagcggtacaaagacaaactgctgcgtccaaatcagccaaaccttgaatcaatgtacaacaattgcttgaagcaggaattccaacaataacattaacaa |
2599913 |
T |
|
| Q |
201 |
gtcctagaacatcagcaca |
219 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
2599914 |
gtcctagaacatcagcaca |
2599932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 2608250 - 2608471
Alignment:
| Q |
1 |
tgaacattggaaaccattaggaacagatttttgacaagcactaagtaggagactaagtgtgacaggcacattcaagttgataccaagaacattagcctta |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||| |
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|
| T |
2608250 |
tgaacattggaaacctgaaggaacagatttttcacaagcactaagtaggagactgagtgtgataggaacattcaagttgataccaagaacattagcctta |
2608349 |
T |
|
| Q |
101 |
atagcggtacaaagacaaactgctgcgtccaaatcagccaaaccttgaatcaatgtacaacatttgcttgaagcaggacttccaacaataacgttaacaa |
200 |
Q |
| |
|
||||| |||||||| |||| |||||| || |||||| |||||||||||| ||||| |||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
2608350 |
atagcagtacaaaggcaaattgctgcatctaaatcaaccaaaccttgaagcaatgcacaacacttgcttgaagcaggacttccaacaataacattaacaa |
2608449 |
T |
|
| Q |
201 |
gtcctagaacatcagcacaaac |
222 |
Q |
| |
|
|||||| ||||||||||||||| |
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|
| T |
2608450 |
gtcctaaaacatcagcacaaac |
2608471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 49329233 - 49329012
Alignment:
| Q |
4 |
acattggaaaccattaggaacagatttttgacaagcactaagtaggagactaagtgtgacaggcacattcaagttgataccaagaacattagccttaata |
103 |
Q |
| |
|
||||||||||||| ||| || | ||||||||| |||||||| || | || || |||| ||||||||||| |||||| ||||| || |||||||||| |
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| T |
49329233 |
acattggaaaccaggagggacggttttttgacatgcactaaggagcaagctgagagtgataggcacattcaggttgatcccaagcacgttagccttaagt |
49329134 |
T |
|
| Q |
104 |
gcggtacaaagacaaactgctgcgtccaaatcagccaaaccttgaatcaatgtacaacatttgct---tgaagcaggacttccaacaataacgttaacaa |
200 |
Q |
| |
|
|| || |||||||||| ||| || ||||||||||||||||| | |||||||| ||||||||| || ||||| |||| |||||| || ||| ||||| | |
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| T |
49329133 |
gcagtgcaaagacaaagtgcagcctccaaatcagccaaacccttaatcaatgcacaacatttactacctgaaggaggatttccaataacaacattaacca |
49329034 |
T |
|
| Q |
201 |
gtcctagaacatcagcacaaac |
222 |
Q |
| |
|
|||| || |||||||||||| |
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|
| T |
49329033 |
accctaaaagatcagcacaaac |
49329012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 222
Target Start/End: Complemental strand, 49331442 - 49331288
Alignment:
| Q |
71 |
ttcaagttgataccaagaacattagccttaatagcggtacaaagacaaactgctgcgtccaaatcagccaaaccttgaatcaatgtacaacatttgct-- |
168 |
Q |
| |
|
|||||||| || ||||| ||||| |||||||| || || |||||||||| ||| || ||||||||||||||||||| || | || |||||| || || |
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| T |
49331442 |
ttcaagtttattccaagcacattggccttaattgcagtgcaaagacaaagtgcagcatccaaatcagccaaacctttgattattgcacaacaattactac |
49331343 |
T |
|
| Q |
169 |
-tgaagcaggacttccaacaataacgttaacaagtcctagaacatcagcacaaac |
222 |
Q |
| |
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|||||||||| ||||||||| ||| ||||| ||||||| ||||||||||||||| |
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|
| T |
49331342 |
ctgaagcaggatttccaacaacaacattaaccagtcctaaaacatcagcacaaac |
49331288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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