View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13692_low_22 (Length: 238)
Name: NF13692_low_22
Description: NF13692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13692_low_22 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 9e-91; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 25525058 - 25524840
Alignment:
| Q |
19 |
caacgaagctagtagtcctttggctttgaggatttgagtgctcgcaacaaatgcaactctaggagccgnnnnnnnnnnaatatgatagatggaacaggta |
118 |
Q |
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| T |
25525058 |
caacgaagctagtagtcctttggctttgacgatttgagtgctcgcaacaaatgcaactctaggagccgttttttttt-aatatgatagatggaacaggta |
25524960 |
T |
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| Q |
119 |
acattcctcagtgaaattggttggtgatgcgttgactgattactcataatttaccattcgctcctataattttcatattttatggtttattaagtttttt |
218 |
Q |
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| T |
25524959 |
acattcctcagtgaaattggttgatgatgcgttgactgattactaataatttaccattcgctcctataattttcagattttatggtttattaagtttttt |
25524860 |
T |
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| Q |
219 |
ctgatgttggctccttttct |
238 |
Q |
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|||||||||||||||||||| |
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| T |
25524859 |
ctgatgttggctccttttct |
25524840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 27 - 231
Target Start/End: Original strand, 25517043 - 25517251
Alignment:
| Q |
27 |
ctagtagtcctttggctttgaggatttgagtgctcgcaacaaatgcaactctaggagccgnnnnnnnnnn----aatatgatagatggaacaggtaacat |
122 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||| | |
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| T |
25517043 |
ctagaagtcctttggctttgaggattcgagtgctcgcaacaaatgcaactctaggagctgtttttttaatggtaaatatgatagatggaataggtaacgt |
25517142 |
T |
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| Q |
123 |
tcctcagtgaaattggttggtgatgcgttgactgattactcataatttaccattcgctcctataattttcatattttatggtttattaagttttttctga |
222 |
Q |
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| T |
25517143 |
tcctcagtgaaattggctgctgatacgttagctgattactcatattttaccattcgctcctacaattttcaaattttatggtttattaagttttttctga |
25517242 |
T |
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| Q |
223 |
tgttggctc |
231 |
Q |
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| T |
25517243 |
tgttggctc |
25517251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 28 - 238
Target Start/End: Complemental strand, 25540590 - 25540375
Alignment:
| Q |
28 |
tagtagtcctttggctttgaggatttgagtgctcgcaacaaatgcaactctaggagccgnnnnnnnnnn-----aatatgatagatggaacaggtaacat |
122 |
Q |
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|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| | ||| |||||||||||||| ||||| | |
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| T |
25540590 |
tagtagtcctttagctttgaggattcgagtgctcgcaacaaatgcaactctaggagctgttctatataatggtaaatttgatagatggaacaagtaacgt |
25540491 |
T |
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| Q |
123 |
tcctcagtgaaattggttggtgatgcgttgactgattactcataatttaccattcgctcctataattttcatattttatggtttattaagttttttctga |
222 |
Q |
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|||||||||||||||||| ||||||||| ||||||||||||| ||||||||| ||||||| |||||||| |||||| | ||||||||||||||| ||| |
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| T |
25540490 |
tcctcagtgaaattggttactgatgcgttagctgattactcatattttaccatttgctcctacaattttcagattttaagatttattaagttttttatga |
25540391 |
T |
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| Q |
223 |
tgttggctccttttct |
238 |
Q |
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| T |
25540390 |
tgttggctccttttct |
25540375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 44461068 - 44461030
Alignment:
| Q |
42 |
ctttgaggatttgagtgctcgcaacaaatgcaactctag |
80 |
Q |
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| T |
44461068 |
ctttgaggattggagtgcttgcaacaaatgcaactctag |
44461030 |
T |
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