View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13692_low_23 (Length: 237)
Name: NF13692_low_23
Description: NF13692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13692_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 2 - 221
Target Start/End: Complemental strand, 41759277 - 41759059
Alignment:
| Q |
2 |
tactctcaccatcacctacgtcacgccccaaaccctgcctattgcaccctccctaataatacacgactccttccataataaggacgcttttggaccacat |
101 |
Q |
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| T |
41759277 |
tactctcaccatcacctacgtcacgccccaaaccccgcctattgcaccctccctaataatacacgactccttccaccataaggacgcctttggaccacat |
41759178 |
T |
|
| Q |
102 |
attttgacactcccctcgaccaccccatgataaatttgttaattttttcagtaatttaaactgattagtttatactaattttcacacatttaaatatatt |
201 |
Q |
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| T |
41759177 |
attttgacactcccctcgacca-cccatgataaatttgttaattttttctgtaatttaaactgattagtttatactaattttcacacatttaaatatatt |
41759079 |
T |
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| Q |
202 |
attaaaaattgaattgaaat |
221 |
Q |
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|||||||||||||||||||| |
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| T |
41759078 |
attaaaaattgaattgaaat |
41759059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 220
Target Start/End: Complemental strand, 25072906 - 25072816
Alignment:
| Q |
131 |
ataaatttgttaattttttcagtaatttaaactgattagtttatactaattttcacacatttaaatatattattaaaaatt-gaattgaaa |
220 |
Q |
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| T |
25072906 |
ataaatttgtcaacttttaaaataatttaaacttattagtttacattatttttcgcatatttaaatgtattattataaattagaattgaaa |
25072816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 210
Target Start/End: Complemental strand, 52527917 - 52527857
Alignment:
| Q |
151 |
agtaatttaaactgattagtttatactaa-ttttcacacatttaaatatattattaaaaat |
210 |
Q |
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| T |
52527917 |
agtaatttaaacttattagtttatattaatttttcatatatttaaatgtattattaaaaat |
52527857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 221
Target Start/End: Complemental strand, 9730355 - 9730266
Alignment:
| Q |
133 |
aaatttgttaattttttcagtaatttaaactgattagtttatactaattttcacacatttaaatatattatta-aaaattgaattgaaat |
221 |
Q |
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||||||||||| |||||| ||||||||| | |||||| || | ||||||| ||| |||||||| |||||||| ||| | |||||||||| |
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| T |
9730355 |
aaatttgttaactttttcggtaatttaaggttattagtatacattaatttttacatatttaaatgtattattataaactagaattgaaat |
9730266 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 4435128 - 4435180
Alignment:
| Q |
131 |
ataaatttgttaattttttcagtaatttaaactgattagtttatactaatttt |
183 |
Q |
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||||||||||||| ||||||| ||||||||||| |||||| || | ||||||| |
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| T |
4435128 |
ataaatttgttaactttttcaataatttaaacttattagtatacattaatttt |
4435180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 175
Target Start/End: Original strand, 11751516 - 11751560
Alignment:
| Q |
131 |
ataaatttgttaattttttcagtaatttaaactgattagtttata |
175 |
Q |
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||||||||||||| ||||||| ||||||||||| |||||| |||| |
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| T |
11751516 |
ataaatttgttaactttttcaataatttaaacttattagtatata |
11751560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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